RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PACS1Q6VY07 963 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 NAXEQ8NCW5 288 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 SNRNP25Q9BV90 132 aaKnown RBP7.89□□□□□ -1.15
SCN9A-201ENST00000303354 ATP13A3Q9H7F0 1226 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 AHSPQ9NZD4 102 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 VPS9D1Q9Y2B5 631 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 GNB5O14775 395 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 ZCCHC18P0CG32 403 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 COPAP53621 1224 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 RHBDL3P58872 404 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 CDH17Q12864 832 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 ACAP2Q15057 778 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 CYP2A13Q16696 494 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 SPRYD7Q5W111 196 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 FAM126AQ9BYI3 521 aaPredicted RBP7.89□□□□□ -1.15
SCN9A-201ENST00000303354 ZCCHC2Q9C0B9 1178 aaKnown RBP7.89□□□□□ -1.15
SCN9A-201ENST00000303354 EVA1BQ9NVM1 165 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 ANAPC2Q9UJX6 822 aa7.89□□□□□ -1.15
SCN9A-201ENST00000303354 RBM7Q9Y580 266 aaKnown RBP7.89□□□□□ -1.15
SCN9A-201ENST00000303354 MATN4O95460 622 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CCNB1P14635 433 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CHRNB3Q05901 458 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 RUNX1T1Q06455 604 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CNGA2Q16280 664 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 APTXQ7Z2E3 356 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 DCBLD1Q8N8Z6 715 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ZNF354BQ96LW1 612 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 GAL3ST4Q96RP7 486 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ISCUQ9H1K1 167 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CA14Q9ULX7 337 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 VIPP01282 170 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CDH3P22223 829 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 GNPDA1P46926 289 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PKNOX1P55347 436 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TSC22D1Q15714 1073 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PKN2Q16513 984 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ZSWIM7Q19AV6 140 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TTC33Q6PID6 262 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 SHC3Q92529 594 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PNMA8CA0A1B0GUJ8 204 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PTGES3LE9PB15 166 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CACNB4O00305 520 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PDE5AO76074 875 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TOMM70O94826 608 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ADH1CP00326 375 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MAPK1P28482 360 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 AP1ARQ63HQ0 302 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 RASGRP3Q8IV61 690 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ZC3H15Q8WU90 426 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MARCH7Q9H992 704 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ARHGEF3Q9NR81 526 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ETNK2Q9NVF9 386 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ELOVL2Q9NXB9 296 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 A0A1W2PQJ5 194 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MAFO75444 373 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CST3P01034 146 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 SLC35G4P0C7Q5 338 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ARF4P18085 180 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TTI2Q6NXR4 508 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TMEM26Q6ZUK4 368 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 KCTD4Q8WVF5 259 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 REXO5Q96IC2 774 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 KLHL28Q9NXS3 571 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 DEC1Q9P2X7 70 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CLEC4AQ9UMR7 237 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MTO1Q9Y2Z2 717 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 SAP18O00422 153 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TPD52L2O43399 206 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 VPS4BO75351 444 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TIPRLO75663 272 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ZNF8P17098 575 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PPP2R1BP30154 601 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 NOS2P35228 1153 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 NEK2P51955 445 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 KLHL12Q53G59 568 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TBCELQ5QJ74 424 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CCDC185Q8N715 623 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 GRAMD1AQ96CP6 724 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TIMM44O43615 452 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 RARAP10276 462 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CHKAP35790 457 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MAPK7Q13164 816 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 KIRREL3Q8IZU9 778 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MCMBPQ9BTE3 642 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 C1orf50Q9BV19 199 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 IDI2Q9BXS1 227 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ATP6AP2A0A1C7CYW4 349 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 MEIS2O14770 477 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 UBDO15205 165 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ATP6AP2O75787 350 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ATG7O95352 703 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 ZNF37AP17032 561 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PSMA4P25789 261 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 PSMB9P28065 219 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 SLC20A2Q08357 652 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 CCINQ13939 588 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 TMPRSS11BQ86T26 416 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 FBXO25Q8TCJ0 367 aa7.88□□□□□ -1.15
SCN9A-201ENST00000303354 SNRNP27Q8WVK2 155 aaKnown RBP7.88□□□□□ -1.15
SCN9A-201ENST00000303354 KCNK16Q96T55 309 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms