RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CACNA2D1P54289 1103 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SULT2A1Q06520 285 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 MS4A13Q5J8X5 152 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TTC23LQ6PF05 361 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SH3RF2Q8TEC5 729 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 E2F7Q96AV8 911 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SRPK1Q96SB4 655 aaKnown RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 EIF2B3Q9NR50 452 aaKnown RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 FAM8A1Q9UBU6 413 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TM9SF1O15321 606 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 INPPL1O15357 1258 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TMEM63AO94886 807 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 RB1P06400 928 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 KITP10721 976 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 GALNT2Q10471 571 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF284Q2VY69 593 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TTMPQ5BVD1 217 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 UGT3A1Q6NUS8 523 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 MSANTD2Q6P1R3 559 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SCML4Q8N228 414 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 LINC01599Q8WXQ3 324 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 ARMC5Q96C12 935 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 PGAP3Q96FM1 320 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 CLPBQ9H078 707 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 KIAA0355O15063 1070 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 LZTS3O60299 673 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 NRLP54845 237 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TTLL9Q3SXZ7 439 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 FNDC3BQ53EP0 1204 aaKnown RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 KIAA0319Q5VV43 1072 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SLC8B1Q6J4K2 584 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 GET4Q7L5D6 327 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 DSG4Q86SJ6 1040 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 GLIS1Q8NBF1 620 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 CSGALNACT1Q8TDX6 532 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 C1orf74Q96LT6 269 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 TUBB6Q9BUF5 446 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 MANSC1Q9H8J5 431 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 FGFR1OP2Q9NVK5 253 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF840PA6NDX5 716 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 KPNA3O00505 521 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 CLGNO14967 610 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SYNCRIPO60506 623 aaKnown RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 CXCL10P02778 98 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 DDX6P26196 483 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 FNBP1LQ5T0N5 605 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 CERCAMQ5T4B2 595 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 PGBD3Q8N328 593 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 SPATA22Q8NHS9 363 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF473Q8WTR7 871 aaKnown RBP11.75□□□□□ -0.53
VPS4A-201ENST00000254950 OSBPL7Q9BZF2 842 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 ACTL7BQ9Y614 415 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 COCHO43405 550 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 NFATC1O95644 943 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM107AO95990 144 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 CNPP09543 421 aaKnown RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 HOXB8P17481 243 aaPredicted RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 NCF2P19878 526 aaPredicted RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 USP46P62068 366 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 DSC2Q02487 901 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ZNF33AQ06730 810 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 CRYMQ14894 314 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FASTKD3Q14CZ7 662 aaKnown RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 RAB41Q5JT25 222 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 UNC5AQ6ZN44 842 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ACAD11Q709F0 780 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 TAS1R1Q7RTX1 841 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 NAT8LQ8N9F0 302 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 SUSD6Q92537 303 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ILVBLA1L0T0 632 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM72CH0Y354 149 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 GRM6O15303 877 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM72AQ5TYM5 149 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 PDE12Q6L8Q7 609 aaKnown RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM72DQ6L9T8 149 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 USP45Q70EL2 814 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 SCD5Q86SK9 330 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM72BQ86X60 149 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 C10orf67Q8IYJ2 551 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 TCEAL8Q8IYN2 117 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 KIRREL3Q8IZU9 778 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 PHOSPHO2Q8TCD6 241 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 STMN2Q93045 179 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ULK4Q96C45 1275 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ZDHHC6Q9H6R6 413 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 SYTL2Q9HCH5 934 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 TXLNGQ9NUQ3 528 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 MARCH5Q9NX47 278 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 G3BP2Q9UN86 482 aaKnown RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 ARL2BPQ9Y2Y0 163 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 PCDHB9Q9Y5E1 797 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 USP3Q9Y6I4 520 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 DIAPH2O60879 1101 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 NDST3O95803 873 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 KRT33BQ14525 404 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 STARD3Q14849 445 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 SIX1Q15475 284 aaPredicted RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 CHI3L2Q15782 390 aa11.74□□□□□ -0.53
VPS4A-201ENST00000254950 FAM133BQ5BKY9 247 aaKnown RBP11.74□□□□□ -0.53
VPS4A-201ENST00000254950 RARS2Q5T160 578 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms