RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ACTRT2Q8TDY3 377 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 NT5C3BQ969T7 300 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 TEKT5Q96M29 485 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 SLC2A13Q96QE2 648 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 SLC39A3Q9BRY0 314 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 TRIM4Q9C037 500 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 IL1RL2Q9HB29 575 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 EIF2B3Q9NR50 452 aaKnown RBP21.62■■□□□ 1.05
TRIM28-201ENST00000253024 OXSMQ9NWU1 459 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 GIMAP2Q9UG22 337 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 LOC285556D6RIA3 1793 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 GRIA2P42262 883 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 LBRQ14739 615 aaKnown RBP21.61■■□□□ 1.05
TRIM28-201ENST00000253024 CYP2R1Q6VVX0 501 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 PDZD4Q76G19 769 aaPredicted RBP21.61■■□□□ 1.05
TRIM28-201ENST00000253024 SATL1Q86VE3 508 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 APBB2Q92870 758 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 NMD3Q96D46 503 aaKnown RBP21.61■■□□□ 1.05
TRIM28-201ENST00000253024 B3GALT6Q96L58 329 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 TRIM8Q9BZR9 551 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 SMIM35A0A1B0GVV1 85 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 FAM95CA0A1B0GW59 222 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 HMBSP08397 361 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 VCLP18206 1134 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 SLC1A2P43004 574 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 RPL14P50914 215 aaKnown RBP21.61■■□□□ 1.05
TRIM28-201ENST00000253024 NRF1Q16656 503 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 TMCO4Q5TGY1 634 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 PDSS2Q86YH6 399 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 ATPAF2Q8N5M1 289 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 EMID1Q96A84 441 aaPredicted RBP21.61■■□□□ 1.05
TRIM28-201ENST00000253024 CLIC5Q9NZA1 410 aa21.61■■□□□ 1.05
TRIM28-201ENST00000253024 DNAJA2O60884 412 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 WARSP23381 471 aaKnown RBP21.6■■□□□ 1.05
TRIM28-201ENST00000253024 CRABP2P29373 138 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 CDH17Q12864 832 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 ART3Q13508 389 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 TBCCQ15814 346 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 FSCBQ5H9T9 825 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 LRRTM3Q86VH5 581 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 DQX1Q8TE96 717 aaKnown RBP21.6■■□□□ 1.05
TRIM28-201ENST00000253024 PABPC5Q96DU9 382 aaKnown RBP21.6■■□□□ 1.05
TRIM28-201ENST00000253024 C1orf21Q9H246 121 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 RBM22Q9NW64 420 aaKnown RBP eCLIP21.6■■□□□ 1.055e-7■■■■■ 40.4
TRIM28-201ENST00000253024 CCDC167Q9P0B6 97 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 KCNU1A8MYU2 1149 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 GRID2O43424 1007 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 FKBP6O75344 327 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 THP07101 528 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 ANO4Q32M45 955 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 KCTD11Q693B1 232 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 CLEC6AQ6EIG7 209 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 OR9I1Q8NGQ6 314 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 SLC39A8Q9C0K1 460 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 A0A1B0GTW7 788 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 POMKQ9H5K3 350 aa21.6■■□□□ 1.05
TRIM28-201ENST00000253024 C17orf102A2RUQ5 167 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 H3BNX3 289 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CCNT2O60583 730 aaKnown RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 FOLH1Q04609 750 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CEACAM7Q14002 265 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CYLC2Q14093 348 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 PGM2L1Q6PCE3 622 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 C14orf80Q86SX3 495 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 OR6P1Q8NGX9 317 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 RCOR3Q9P2K3 495 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CRYL1Q9Y2S2 319 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 ACOT9Q9Y305 439 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 PTGDR2Q9Y5Y4 395 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 ARL5CA6NH57 179 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 HDAC3O15379 428 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 TIMM44O43615 452 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 KCNE1P15382 129 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 GSTT1P30711 240 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 ALDH1A3P47895 512 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CDH13P55290 713 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 C6orf52Q5T4I8 152 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 LRRC8EQ6NSJ5 796 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 CIR1Q86X95 450 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 TOP6BLQ8N6T0 577 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 TXNDC5Q8NBS9 432 aaKnown RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 HEXDCQ8WVB3 486 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 TSR3Q9UJK0 312 aaKnown RBP21.59■■□□□ 1.05
TRIM28-201ENST00000253024 DTNAQ9Y4J8 743 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 ASB3Q9Y575 518 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 KCTD3Q9Y597 815 aa21.59■■□□□ 1.05
TRIM28-201ENST00000253024 RBM47A0AV96 593 aaKnown RBP21.58■■□□□ 1.05
TRIM28-201ENST00000253024 ZNF487B1APH4 448 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 MATN2O00339 956 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 HLA-DQB2P05538 268 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 SLC12A2P55011 1212 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 PRPSAP1Q14558 356 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 IQSEC1Q6DN90 963 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 LSMEM2Q8N112 164 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 SREK1Q8WXA9 508 aaKnown RBP21.58■■□□□ 1.05
TRIM28-201ENST00000253024 PPP2R3CQ969Q6 453 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 PPP1R10Q96QC0 940 aaKnown RBP21.58■■□□□ 1.05
TRIM28-201ENST00000253024 TBL1YQ9BQ87 522 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 IL22Q9GZX6 179 aa21.58■■□□□ 1.05
TRIM28-201ENST00000253024 FAM105AQ9NUU6 356 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms