RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PCDH19Q8TAB3 1148 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KBTBD7Q8WVZ9 684 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM159Q96B96 161 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ELMO3Q96BJ8 720 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 AIFM2Q9BRQ8 373 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PLGRKTQ9HBL7 147 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PLEK2Q9NYT0 353 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM63CQ9P1W3 806 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ABCG2Q9UNQ0 655 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRF5Q8IZF2 1346 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 A0A1B0GTH6 734 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 EFCAB7A8K855 629 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ECE2O60344 883 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TSPAN3O60637 253 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RPP40O75818 363 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GJB1P08034 283 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 HOXB9P17482 250 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NTSP30990 170 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GMFBP60983 142 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PLGLB1Q02325 96 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RGS21Q2M5E4 152 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 P3H1Q32P28 736 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DCDC5Q6ZRR9 648 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 OTOP3Q7RTS5 596 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FIBCD1Q8N539 461 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ART5Q96L15 291 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PRICKLE1Q96MT3 831 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RANBP17Q9H2T7 1088 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 HSPBP1Q9NZL4 362 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 POLG2Q9UHN1 485 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RAPGEFL1Q9UHV5 662 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DYRK1BQ9Y463 629 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAN2B1O00754 1011 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SPTLC1O15269 473 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NDUFS3O75489 264 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PAEPP09466 180 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PECAM1P16284 738 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PLCG1P19174 1290 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LHX1P48742 406 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SLC7A5Q01650 507 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 R3HDM1Q15032 1099 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 C5orf22Q49AR2 442 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 USP51Q70EK9 711 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LINC00523Q86TU6 105 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CACTIN-AS1Q8N1I8 211 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CLPTM1LQ96KA5 538 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL32Q96NJ5 620 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CITED4Q96RK1 184 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MTG1Q9BT17 334 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC8Q9H0W5 538 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PNO1Q9NRX1 252 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAD2L2Q9UI95 211 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCNIP3Q9Y2W7 256 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHA5Q9Y5H7 936 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CLUHO75153 1309 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF608Q9ULD9 1512 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GRID2IPA4D2P6 1211 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SAGE2PA6NJ88 616 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ATXN8OSP0DMR3 200 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NQO1P15559 274 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCNA6P17658 529 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CLCN7P51798 805 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ST3GAL4Q11206 333 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MESDQ14696 234 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MPPE1Q53F39 396 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SETMARQ53H47 684 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PAPD7Q5XG87 772 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 IQSEC1Q6DN90 963 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FAAH2Q6GMR7 532 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 B3GNT6Q6ZMB0 384 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DGLUCYQ7Z3D6 616 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 JAMLQ86YT9 394 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PRR22Q8IZ63 422 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PPM1KQ8N3J5 372 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 MAB21L3Q8N8X9 362 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZFP28Q8NHY6 868 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SNX33Q8WV41 574 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SERAC1Q96JX3 654 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 EPB41L4AQ9HCS5 686 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PNPLA8Q9NP80 782 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 XPO7Q9UIA9 1087 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF214Q9UL59 606 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCNJ14Q9UNX9 436 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PIN4Q9Y237 131 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CDC42BPBQ9Y5S2 1711 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CROCC2H7BZ55 1655 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SEC14L5O43304 696 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CRTAMO95727 393 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CYP1A1P04798 512 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FGRP09769 529 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM253P0C7T8 217 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PRKAR1AP10644 381 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TNFSF4P23510 183 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SERPINA4P29622 427 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCR1P32246 355 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ITIH4Q14624 930 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 OASLQ15646 514 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 EPC2Q52LR7 807 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PTRHD1Q6GMV3 140 aaKnown RBP2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms