RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SNX16P57768 344 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 POM121L1PQ3SYA9 428 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 ZNF783Q6ZMS7 281 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 ERN2Q76MJ5 926 aaKnown RBP16.81■□□□□ 0.28
CLN3-255ENST00000637100 LSMEM2Q8N112 164 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 RNF34Q969K3 372 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 VOPP1Q96AW1 172 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 CCDC114Q96M63 670 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 NOX5Q96PH1 765 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 SIX2Q9NPC8 291 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 FARP1Q9Y4F1 1045 aaPredicted RBP16.81■□□□□ 0.28
CLN3-255ENST00000637100 CSNK1G3Q9Y6M4 447 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 WASF2Q9Y6W5 498 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 ZNF462Q96JM2 2506 aa16.81■□□□□ 0.28
CLN3-255ENST00000637100 A0A0D9SEW6 157 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 AP1G1O43747 822 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 PRLRP16471 622 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 PON1P27169 355 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 AKT2P31751 481 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 LSSP48449 732 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ERVPABLB-1P60509 514 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 SKOR1P84550 965 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 PTK2Q05397 1052 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 SLC20A2Q08357 652 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 NME3Q13232 169 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 OR6B2Q6IFH4 312 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 GBP6Q6ZN66 633 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ZSCAN30Q86W11 494 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 PLPP6Q8IY26 295 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ZNF843Q8N446 348 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ATP11CQ8NB49 1132 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 CHST14Q8NCH0 376 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ZNF248Q8NDW4 579 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ASB12Q8WXK4 309 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 APOLD1Q96LR9 279 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 LENG8Q96PV6 779 aaPredicted RBP16.8■□□□□ 0.28
CLN3-255ENST00000637100 CRACR2AQ9BSW2 395 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 CEP44Q9C0F1 390 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 TKTL2Q9H0I9 626 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 MUC3BQ9H195 1237 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 WDCPQ9H6R7 721 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 PCDHB1Q9Y5F3 818 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 ATMQ13315 3056 aa16.8■□□□□ 0.28
CLN3-255ENST00000637100 COL27A1Q8IZC6 1860 aaPredicted RBP16.8■□□□□ 0.28
CLN3-255ENST00000637100 SYNJ2BP-COX16A0A087WUM0 186 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 ILVBLA1L0T0 632 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 KPNA3O00505 521 aaPredicted RBP16.79■□□□□ 0.28
CLN3-255ENST00000637100 F9P00740 461 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 CSF2P04141 144 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 RHOCP08134 193 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 TFE3P19532 575 aaPredicted RBP16.79■□□□□ 0.28
CLN3-255ENST00000637100 RRM1P23921 792 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 GGCXP38435 758 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 APBA1Q02410 837 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 FGL2Q14314 439 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 EXOC3L4Q17RC7 722 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 C22orf39Q6P5X5 142 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 KYAT3Q6YP21 454 aaKnown RBP16.79■□□□□ 0.28
CLN3-255ENST00000637100 DPY19L3Q6ZPD9 716 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 FAM71AQ8IYT1 594 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 GRAMD1AQ96CP6 724 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 KLF6Q99612 283 aaPredicted RBP16.79■□□□□ 0.28
CLN3-255ENST00000637100 DUSP23Q9BVJ7 150 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 C1QTNF2Q9BXJ5 285 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 SIK2Q9H0K1 926 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 CAAP1Q9H8G2 361 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 ASCL3Q9NQ33 180 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 COX16Q9P0S2 106 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 RWDD2AQ9UIY3 292 aa16.79■□□□□ 0.28
CLN3-255ENST00000637100 AJAP1Q9UKB5 411 aaPredicted RBP16.79■□□□□ 0.28
CLN3-255ENST00000637100 SPTY2D1-AS1A0A0U1RR47 76 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 NEMP2A6NFY4 417 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 A6NNZ2 444 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 K7ESM1 405 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ERVH48-1M5A8F1 160 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 FOXN3O00409 490 aaPredicted RBP16.78■□□□□ 0.28
CLN3-255ENST00000637100 ENDOD1O94919 500 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 CD160O95971 181 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ALPPL2P10696 532 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 NME1P15531 152 aaKnown RBP16.78■□□□□ 0.28
CLN3-255ENST00000637100 ITGB7P26010 798 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 DUSP3P51452 185 aaPredicted RBP16.78■□□□□ 0.28
CLN3-255ENST00000637100 HNRNPKP61978 463 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-255ENST00000637100 DAB2P98082 770 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 FZD2Q14332 565 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ARHGAP44Q17R89 818 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 SLC25A52Q3SY17 297 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ARSIQ5FYB1 569 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 SEL1L3Q68CR1 1132 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 KIAA1161Q6NSJ0 714 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 KDM7AQ6ZMT4 941 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 Q6ZSR6 202 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ARCQ7LC44 396 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 PASD1Q8IV76 773 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 KLK6Q92876 244 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 ISG20Q96AZ6 181 aaKnown RBP16.78■□□□□ 0.28
CLN3-255ENST00000637100 DEPDC7Q96QD5 511 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 HAPLN3Q96S86 360 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 SLC17A9Q9BYT1 436 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 POLR1BQ9H9Y6 1135 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms