RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 DLG1Q12959 904 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 DMP1Q13316 513 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 CTTNQ14247 550 aaKnown RBP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 CCDC6Q16204 474 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 SYTL3Q4VX76 610 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 XKR9Q5GH70 373 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 FAM209BQ5JX69 171 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 RHBDF2Q6PJF5 856 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 GDPD4Q6W3E5 623 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TRMT1LQ7Z2T5 733 aaKnown RBP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 VPS52Q8N1B4 723 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 MAB21L3Q8N8X9 362 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TEX45Q8NA69 505 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 FAR1Q8WVX9 515 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 HMGB4Q8WW32 186 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 BRI3BPQ8WY22 251 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TAF15Q92804 592 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TMEM18Q96B42 140 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TRIM31Q9BZY9 425 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TM7SF3Q9NS93 570 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TMEM248Q9NWD8 314 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 FAM50BQ9Y247 325 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 NFS1Q9Y697 457 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 A0A0U1RQJ8 604 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 DYTNA2CJ06 578 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 DDTLA6NHG4 134 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 PIP5K1BO14986 540 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 DNPH1O43598 174 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 FGF18O76093 207 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 FCGR2AP12318 317 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 CKMT1AP12532 417 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 SLC5A1P13866 664 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 TNFSF4P23510 183 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 PHEXP78562 749 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 RBBP5Q15291 538 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 TMEM268Q5VZI3 342 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 MTFR2Q6P444 385 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 KIAA1324Q6UXG2 1013 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 UNQ6126/PRO20091Q6UXV3 157 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 RNF144BQ7Z419 303 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 WDR75Q8IWA0 830 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 IL17RCQ8NAC3 791 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 ZNF114Q8NC26 417 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 DBF4BQ8NFT6 615 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 IPO4Q8TEX9 1081 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 FBXO17Q96EF6 278 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 FRG2BQ96QU4 278 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 PRPF18Q99633 342 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 MMP28Q9H239 520 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 EVA1AQ9H8M9 152 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 PDE11AQ9HCR9 933 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 SCRT2Q9NQ03 307 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 LIN7CQ9NUP9 197 aaKnown RBP3.08□□□□□ -1.92
SCN1A-208ENST00000625916 PCDHA10Q9Y5I2 948 aa3.08□□□□□ -1.92
SCN1A-208ENST00000625916 A0A0A0MQY5 61 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 ZG16O60844 167 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 RPL3P39023 403 aaKnown RBP3.07□□□□□ -1.92
SCN1A-208ENST00000625916 ERVK11-1P61568 191 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 ALKBH1Q13686 389 aaKnown RBP3.07□□□□□ -1.92
SCN1A-208ENST00000625916 PATL1Q86TB9 770 aaKnown RBP3.07□□□□□ -1.92
SCN1A-208ENST00000625916 WDR5BQ86VZ2 330 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 PGBD5Q8N414 524 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 SPEM1Q8N4L4 309 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 HDAC7Q8WUI4 952 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 SORCS1Q8WY21 1168 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 KCNJ9Q92806 393 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 MTBPQ96DY7 904 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 FEM1CQ96JP0 617 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 PGLYRP2Q96PD5 576 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 DUX3Q96PT4 197 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 GAB2Q9UQC2 676 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 SLC45A1Q9Y2W3 748 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 MST1RQ04912 1400 aa3.07□□□□□ -1.92
SCN1A-208ENST00000625916 RASA4BC9J798 803 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 GRM8O00222 908 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 DDAH2O95865 285 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TBX6O95947 436 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-208ENST00000625916 CH25HO95992 272 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 CRYAAP02489 173 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 CDK18Q07002 472 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TROAPQ12815 778 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 BTBD16Q32M84 506 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 GXYLT1Q4G148 440 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 COBLL1Q53SF7 1204 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TUBA1AQ71U36 451 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 DPP9Q86TI2 863 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TRIM74Q86UV6 250 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TRIM73Q86UV7 250 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 GATAD2AQ86YP4 633 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 RBFAQ8N0V3 343 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 LRRC8CQ8TDW0 803 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 OR1F2PQ96R84 312 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 NPAS1Q99742 590 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 TUBA1CQ9BQE3 449 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 C1QTNF5Q9BXJ0 243 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 CADM1Q9BY67 442 aaKnown RBP3.06□□□□□ -1.92
SCN1A-208ENST00000625916 EGLN1Q9GZT9 426 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 SLC39A10Q9ULF5 831 aa3.06□□□□□ -1.92
SCN1A-208ENST00000625916 OSGIN2Q9Y236 505 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms