RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 OMDQ99983 421 aa16.34■□□□□ 0.21
BRCA1-228ENST00000618469 SNRNP25Q9BV90 132 aaKnown RBP16.34■□□□□ 0.21
BRCA1-228ENST00000618469 GTPBP2Q9BX10 602 aaKnown RBP16.34■□□□□ 0.21
BRCA1-228ENST00000618469 NUSAP1Q9BXS6 441 aaKnown RBP16.34■□□□□ 0.21
BRCA1-228ENST00000618469 MIR1-1HGQ9H1L0 117 aa16.34■□□□□ 0.21
BRCA1-228ENST00000618469 SLC32A1Q9H598 525 aa16.34■□□□□ 0.21
BRCA1-228ENST00000618469 MSRB2Q9Y3D2 182 aa16.34■□□□□ 0.21
BRCA1-228ENST00000618469 PCDH15Q96QU1 1955 aa16.33■□□□□ 0.21
BRCA1-228ENST00000618469 C1QTNF3-AMACRE9PGA6 284 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 SMAD6O43541 496 aaKnown RBP16.33■□□□□ 0.2
BRCA1-228ENST00000618469 PRPSAP2O60256 369 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 LRCH4O75427 683 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ZMPSTE24O75844 475 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 C5AR1P21730 350 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 MIPP30301 263 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 CLCN6P51797 869 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 METAP1P53582 386 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ARF5P84085 180 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 GFPT1Q06210 699 aaPredicted RBP16.33■□□□□ 0.2
BRCA1-228ENST00000618469 SFSWAPQ12872 951 aaKnown RBP16.33■□□□□ 0.2
BRCA1-228ENST00000618469 SEMA3BQ13214 749 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 DUOXA1Q1HG43 343 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ZNF354CQ86Y25 554 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 AADATQ8N5Z0 425 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ARFGAP1Q8N6T3 406 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 OR8K1Q8NGG5 319 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 CEP76Q8TAP6 659 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ARHGEF26Q96DR7 871 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 NUP85Q9BW27 656 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 PCED1AQ9H1Q7 454 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 TNKS2Q9H2K2 1166 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 DEF6Q9H4E7 631 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 DHX35Q9H5Z1 703 aaKnown RBP16.33■□□□□ 0.2
BRCA1-228ENST00000618469 RETREG1Q9H6L5 497 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 CATSPERBQ9H7T0 1116 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 SGK2Q9HBY8 427 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ABHD10Q9NUJ1 306 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ZNHIT6Q9NWK9 470 aaKnown RBP16.33■□□□□ 0.2
BRCA1-228ENST00000618469 SUSD2Q9UGT4 822 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 ANAPC7Q9UJX3 599 aa16.33■□□□□ 0.2
BRCA1-228ENST00000618469 FAM47DPA6NHR8 397 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 METTL12A8MUP2 240 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 ALOX15BO15296 676 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 FGF10O15520 208 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 FSBPO95073 299 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 GNSP15586 552 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 CA9Q16790 459 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 POM121L1PQ3SYA9 428 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 SOWAHCQ53LP3 525 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 SLC23A3Q6PIS1 610 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 SARM1Q6SZW1 724 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 HDDC3Q8N4P3 179 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 GRIN3AQ8TCU5 1115 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 ARHGEF2Q92974 986 aaKnown RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 ACE2Q9BYF1 805 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 TRIM5Q9C035 493 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 MAGEH1Q9H213 219 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 EIF2B4Q9UI10 523 aaKnown RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 FZD4Q9ULV1 537 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 NENFQ9UMX5 172 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 FCF1Q9Y324 198 aaKnown RBP16.32■□□□□ 0.2
BRCA1-228ENST00000618469 ACTL7AQ9Y615 435 aa16.32■□□□□ 0.2
BRCA1-228ENST00000618469 EEF2KO00418 725 aaKnown RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 PLK4O00444 970 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 MCF2LO15068 1137 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 CYP1A2P05177 515 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 SERPINF2P08697 491 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 RECQLP46063 649 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 GALCP54803 685 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 ADPRHP54922 357 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 ADKP55263 362 aaKnown RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 POLD3Q15054 466 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 TSR1Q2NL82 804 aaKnown RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 PPP6R3Q5H9R7 873 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 ERMARDQ5T6L9 678 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 FAM46CQ5VWP2 391 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 CYP4V2Q6ZWL3 525 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 OR2A12Q8NGT7 310 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 PIP4K2CQ8TBX8 421 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 DNASE2BQ8WZ79 361 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 BTBD6Q96KE9 485 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 CAMK1GQ96NX5 476 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 KCTD15Q96SI1 283 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 NEUROG2Q9H2A3 272 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 CAPN10Q9HC96 672 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 SARDHQ9UL12 918 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 HPCAL4Q9UM19 191 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 SLC6A14Q9UN76 642 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 FARP1Q9Y4F1 1045 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-228ENST00000618469 PLXNA2O75051 1894 aa16.31■□□□□ 0.2
BRCA1-228ENST00000618469 A0A1B0GTW7 788 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 SSU72P8A0A1W2PR75 194 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 EIF3CLB5ME19 914 aaKnown RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 AKR1B10O60218 316 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 CTSLP07711 333 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 TCF4P15884 667 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 GOT1P17174 413 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 HTR7P34969 479 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 DRD3P35462 400 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms