RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FTCDO95954 541 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 NAP1L1P55209 391 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 OXCT1P55809 520 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 DYNLT1P63172 113 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 SIM2Q14190 667 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 HADHQ16836 314 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 KCTD19Q17RG1 926 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 ZFYVE27Q5T4F4 411 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PSTKQ8IV42 348 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PLD5Q8N7P1 536 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 ZNF557Q8N988 423 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 CCDC26Q8TAB7 109 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 GAB3Q8WWW8 586 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 RSPH9Q9H1X1 276 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 KCNH6Q9H252 994 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 SMG5Q9UPR3 1016 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 GOLGA4Q13439 2230 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 FRYQ5TBA9 3013 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 A0A0A6YYK5 440 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 A0A1W2PP55 124 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PRR23AA6NEV1 266 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 KDELR3O43731 214 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PALMO75781 387 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PEX11BO96011 259 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 KRT1P04264 644 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 DRD3P35462 400 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 ARL4AP40617 200 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 MRE11P49959 708 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 GSE1Q14687 1217 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PLK5Q496M5 336 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 LRRC73Q5JTD7 316 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 SLC41A1Q8IVJ1 513 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 TSEN2Q8NCE0 465 aaKnown RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 PDLIM2Q96JY6 352 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 EPC1Q9H2F5 836 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 LZTFL1Q9NQ48 299 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 GUCA1BQ9UMX6 200 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 WASF2Q9Y6W5 498 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 EDDM13A0A1B0GTR0 161 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 H3BRJ5 948 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 IL1BP01584 269 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 MAOBP27338 520 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 HCAR3P49019 387 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 KRT83P78385 493 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 SULT2A1Q06520 285 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 IHHQ14623 411 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 CYTH1Q15438 398 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 ACBD5Q5T8D3 534 aaPredicted RBP13.74□□□□□ -0.21
LINC00540-202ENST00000616974 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.74□□□□□ -0.21
LINC00540-202ENST00000616974 FAF2Q96CS3 445 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 TOE1Q96GM8 510 aaKnown RBP13.74□□□□□ -0.21
LINC00540-202ENST00000616974 TMEM74BQ9NUR3 256 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 USP36Q9P275 1121 aaKnown RBP13.74□□□□□ -0.21
LINC00540-202ENST00000616974 CEP295Q9C0D2 2601 aa13.74□□□□□ -0.21
LINC00540-202ENST00000616974 ARHGAP6O43182 974 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ALDH1A2O94788 518 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 SLC10A7Q0GE19 358 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 CST6Q15828 149 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 KAZNQ674X7 775 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 TCEAL6Q6IPX3 200 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 TMCO3Q6UWJ1 677 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ZNF783Q6ZMS7 281 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 CEP68Q76N32 757 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PGBD5Q8N414 524 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PRCCQ92733 491 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 TCEAL3Q969E4 200 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 HAUS1Q96CS2 278 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 FAM118BQ9BPY3 351 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 FAM126AQ9BYI3 521 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 C10orf88Q9H8K7 445 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 FSCN3Q9NQT6 498 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 LHX3Q9UBR4 397 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 FREM2Q5SZK8 3169 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NPC1O15118 1278 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 MAFKO60675 156 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PRAMEF11O60813 436 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 LEFTY1O75610 366 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 IPO7O95373 1038 aaKnown RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PECAM1P16284 738 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ITIH2P19823 946 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 SLC8A1P32418 973 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 CCNHP51946 323 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NRLP54845 237 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 DCAF12L1Q5VU92 463 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 C11orf63Q6NUN7 778 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NT5DC3Q86UY8 548 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ALYREFQ86V81 257 aaKnown RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NKD2Q969F2 451 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ARRDC3Q96B67 414 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 RNF157Q96PX1 679 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 LGMNQ99538 433 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 GPR174Q9BXC1 333 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 HEMGNQ9BXL5 484 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 CEP41Q9BYV8 373 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NEUROG2Q9H2A3 272 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 C6orf106Q9H6K1 298 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PARD6AQ9NPB6 346 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 ITM2CQ9NQX7 267 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 RXFP3Q9NSD7 469 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 DTLQ9NZJ0 730 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms