RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MTA2O94776 668 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 LCA5LO95447 670 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SEMA4FO95754 770 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 CD160O95971 181 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 FECHP22830 423 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 CHRNA3P32297 505 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 MAGEA1P43355 309 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 MESDQ14696 234 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SF3A2Q15428 464 aaKnown RBP17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SPA17Q15506 151 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 WDR45BQ5MNZ6 344 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 PEAR1Q5VY43 1037 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-215ENST00000601150 POLNQ7Z5Q5 900 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 TMTC1Q8IUR5 882 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 RGL4Q8IZJ4 473 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 PIP4K2CQ8TBX8 421 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 CASKIN2Q8WXE0 1202 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 KLC2Q9H0B6 622 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 NEUROG2Q9H2A3 272 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SMOC1Q9H4F8 434 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 PCDH18Q9HCL0 1135 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SERGEFQ9UGK8 458 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 PILRBQ9UKJ0 227 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 SARDHQ9UL12 918 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 ACTL7AQ9Y615 435 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.18■□□□□ 0.34
TRIM28-215ENST00000601150 ATXN2Q99700 1313 aaKnown RBP17.18■□□□□ 0.34
TRIM28-215ENST00000601150 ARHGAP42A6NI28 874 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 METTL12A8MUP2 240 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 PRR5-ARHGAP8B1AHC4 643 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 KHNYNO15037 678 aaKnown RBP17.17■□□□□ 0.34
TRIM28-215ENST00000601150 ZNF821O75541 412 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-215ENST00000601150 PRNPP04156 253 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 ARHGAP25P42331 645 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 DNA2P51530 1060 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 ARHGAP8P85298 464 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 KRT81Q14533 505 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 TCEAL1Q15170 157 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 CARD16Q5EG05 197 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 DCAF12L1Q5VU92 463 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 AFMIDQ63HM1 303 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 LEKR1Q6ZMV7 388 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 CPNE8Q86YQ8 564 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 PLPP6Q8IY26 295 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 LZTR1Q8N653 840 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 CHST14Q8NCH0 376 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 TMIEQ8NEW7 156 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 CELF6Q96J87 481 aaKnown RBP17.17■□□□□ 0.34
TRIM28-215ENST00000601150 CSPG4P5Q96PW8 444 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 SLC39A8Q9C0K1 460 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 LUC7LQ9NQ29 371 aaKnown RBP17.17■□□□□ 0.34
TRIM28-215ENST00000601150 TMEM74BQ9NUR3 256 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 RCOR3Q9P2K3 495 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-215ENST00000601150 IMPACTQ9P2X3 320 aa17.17■□□□□ 0.34
TRIM28-215ENST00000601150 GON4LQ3T8J9 2241 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 CTSLP07711 333 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 KRT7P08729 469 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 AMPD1P23109 780 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 DRD3P35462 400 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 GJC1P36383 396 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 PAPOLAP51003 745 aaKnown RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 METAP1P53582 386 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 CDH6P55285 790 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 TAS2R40P59535 323 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 AASDHQ4L235 1098 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 INO80DQ53TQ3 878 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 DPY19L3Q6ZPD9 716 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 RABEPKQ7Z6M1 372 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 CEP76Q8TAP6 659 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 FAM71BQ8TC56 605 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 DNASE2BQ8WZ79 361 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 TSC1Q92574 1164 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 TM6SF2Q9BZW4 377 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 C6orf106Q9H6K1 298 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 IL36AQ9UHA7 158 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 EVLQ9UI08 416 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-215ENST00000601150 PCDHA13Q9Y5I0 950 aa17.16■□□□□ 0.34
TRIM28-215ENST00000601150 SOWAHDA6NJG2 315 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 LRRC72A6NJI9 287 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 PATE3B3GLJ2 98 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 KPNA3O00505 521 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 SLC7A4O43246 635 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 TMCC1O94876 653 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 GSRP00390 522 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 ARSEP51690 589 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 CCNHP51946 323 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 SNRPD1P62314 119 aaKnown RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 DUOXA1Q1HG43 343 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 POM121L1PQ3SYA9 428 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 ARSIQ5FYB1 569 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 TCEAL6Q6IPX3 200 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 TMCO3Q6UWJ1 677 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 ARHGAP12Q8IWW6 846 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 NPWQ8N729 165 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 OR2T34Q8NGX1 318 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 GRIN3AQ8TCU5 1115 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 TCEAL3Q969E4 200 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 FAM131CQ96AQ9 280 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 HEPHQ9BQS7 1158 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms