RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 C11orf74Q86VG3 221 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 PCDH20Q8N6Y1 951 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 TOE1Q96GM8 510 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 LOXL4Q96JB6 756 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 SPACA7Q96KW9 195 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 ZNF670Q9BS34 389 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 TRIM10Q9UDY6 481 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 ALG6Q9Y672 507 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 WASF2Q9Y6W5 498 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 SHROOM3Q8TF72 1996 aa19.88■□□□□ 0.77
SHKBP1-221ENST00000599833 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 KDELR1P24390 212 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 CD6P30203 668 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 ACSL1P33121 698 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 ARL4AP40617 200 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 SSR1P43307 286 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 CCZ1BP86790 482 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 CCZ1P86791 482 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 PDK2Q15119 407 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 TAZQ16635 292 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 INO80DQ53TQ3 878 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 ANKRD20A8PQ5CZ79 823 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 PLPP6Q8IY26 295 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 TMEFF1Q8IYR6 380 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 LHX3Q9UBR4 397 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 PI4KAP42356 2102 aa19.87■□□□□ 0.77
SHKBP1-221ENST00000599833 GOLGA6L3A6NEY3 463 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 ZSCAN5CA6NGD5 496 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 ZNF487B1APH4 448 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 DAPK3O43293 454 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 BUB1O43683 1085 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 MFSD11O43934 449 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 TMCC1O94876 653 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 DNTTP04053 509 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 RETP07949 1114 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 SLC8A1P32418 973 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 PSMD8P48556 350 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 MARCKSL1P49006 195 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 BYSLQ13895 437 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 KRT81Q14533 505 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 PAFAH1B3Q15102 231 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 SPDYCQ5MJ68 293 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 PLA2G2CQ5R387 149 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 PEAR1Q5VY43 1037 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 USP30Q70CQ3 517 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 LRRC8AQ8IWT6 810 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 LZTR1Q8N653 840 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 LRRC57Q8N9N7 239 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 RUBCNQ92622 972 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 ZNF419Q96HQ0 510 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 DONSONQ9NYP3 566 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 SCML1Q9UN30 329 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 ADGRG1Q9Y653 693 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 DOCK9Q9BZ29 2069 aa19.86■□□□□ 0.77
SHKBP1-221ENST00000599833 A0A1W2PP55 124 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 MAFKO60675 156 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 C5AR1P21730 350 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 CHRNA3P32297 505 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 NOP2P46087 812 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 SLC10A2Q12908 348 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 CARD16Q5EG05 197 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 TMCO3Q6UWJ1 677 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 SLC36A4Q6YBV0 504 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 VSIG1Q86XK7 387 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 KCTD6Q8NC69 237 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 PIP4K2CQ8TBX8 421 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 OR8D1Q8WZ84 308 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 KRT35Q92764 455 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 ARRDC3Q96B67 414 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 NSMCE3Q96MG7 304 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 RNF157Q96PX1 679 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 LUC7LQ9NQ29 371 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 CACNA1EQ15878 2313 aa19.85■□□□□ 0.77
SHKBP1-221ENST00000599833 ANKRD36A6QL64 1941 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 BCLAF3A2AJT9 711 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 GRID2IPA4D2P6 1211 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 ARHGAP42A6NI28 874 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 PLK4O00444 970 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 MUSKO15146 869 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 ZBTB24O43167 697 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 RHOBTB1O94844 696 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 ADH1BP00325 375 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 GSRP00390 522 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 IL1BP01584 269 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 ACADMP11310 421 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 GKP32189 559 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 CCNHP51946 323 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 GEMIN4P57678 1058 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 RPL6Q02878 288 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 IL10RBQ08334 325 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 AGBL4Q5VU57 503 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 RHOT1Q8IXI2 618 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 DEFB119Q8N690 84 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 PLD5Q8N7P1 536 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 TMIEQ8NEW7 156 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 CASKIN2Q8WXE0 1202 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 ORAI3Q9BRQ5 295 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 CALN1Q9BXU9 219 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 TM6SF2Q9BZW4 377 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 NEUROG2Q9H2A3 272 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms