RNA–Protein interactions for RNA: ENST00000587928.5

ILF3-208, Transcript of interleukin enhancer binding factor 3, human

TSL 2

Gene ILF3, Length 4,230 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ILF3-208	ENST00000587928	FCRL3	Q96P31	734 aa	Predicted RBP	11.1	□□□□□ -0.63
ILF3-208	ENST00000587928	RNF39	Q9H2S5	420 aa		11.1	□□□□□ -0.63
ILF3-208	ENST00000587928	ABHD16B	Q9H3Z7	469 aa		11.1	□□□□□ -0.63
ILF3-208	ENST00000587928	CASS4	Q9NQ75	786 aa		11.1	□□□□□ -0.63
ILF3-208	ENST00000587928	LZTS1	Q9Y250	596 aa		11.1	□□□□□ -0.63
ILF3-208	ENST00000587928	SMIM28	A0A1B0GU29	152 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	SNTN	A6NMZ2	147 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	CYP11A1	P05108	521 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	AOC1	P19801	751 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ARNT	P27540	789 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	CDO1	Q16878	200 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	C8orf82	Q6P1X6	216 aa	Predicted RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ALDH16A1	Q8IZ83	802 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	GOLM1	Q8NBJ4	401 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	UBA3	Q8TBC4	463 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	STARD8	Q92502	1023 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TPK1	Q9H3S4	243 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	MRM3	Q9HC36	420 aa	Known RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	CRTAC1	Q9NQ79	661 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	SNX9	Q9Y5X1	595 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	KIAA1549L	Q6ZVL6	1849 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928		G3V2L1	256 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ATP5B	P06576	529 aa	Known RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	FUT4	P22083	530 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ADRA1A	P35348	466 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	MATK	P42679	507 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	XIAP	P98170	497 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	RELA	Q04206	551 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	PTK2B	Q14289	1009 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TRIM71	Q2Q1W2	868 aa	Known RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TEDDM1	Q5T9Z0	273 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	C4orf50	Q6ZRC1	276 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ACAD11	Q709F0	780 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	SLC26A11	Q86WA9	606 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TP53INP2	Q8IXH6	220 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	FAM172A	Q8WUF8	416 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	MED10	Q9BTT4	135 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	NXF3	Q9H4D5	531 aa	Known RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ARL8B	Q9NVJ2	186 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	RAD54B	Q9Y620	910 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	DENND4A	Q7Z401	1863 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	PDGFRA	P16234	1089 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ARFIP2	P53365	341 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	AIF1	P55008	147 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	CDK16	Q00536	496 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ROR1	Q01973	937 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	LGSN	Q5TDP6	509 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	DENND5A	Q6IQ26	1287 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	NOTUM	Q6P988	496 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	CLEC20A	Q6ZU45	233 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TRPV1	Q8NER1	839 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ZNF560	Q96MR9	790 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TSGA13	Q96PP4	275 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	MLPH	Q9BV36	600 aa	Predicted RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	MOV10	Q9HCE1	1003 aa	Known RBP	11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	TBK1	Q9UHD2	729 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	ST14	Q9Y5Y6	855 aa		11.09	□□□□□ -0.63
ILF3-208	ENST00000587928	FAM72C	H0Y354	149 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	HUS1	O60921	280 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	PSMG1	O95456	288 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SREBF2	Q12772	1141 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SLC14A2	Q15849	920 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	ARL13B	Q3SXY8	428 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	FAM72A	Q5TYM5	149 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	IQSEC1	Q6DN90	963 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	FAM72D	Q6L9T8	149 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	RFWD3	Q6PCD5	774 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	GPRIN1	Q7Z2K8	1008 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	FAM72B	Q86X60	149 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	MFSD6L	Q8IWD5	586 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	DTX3L	Q8TDB6	740 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	VOPP1	Q96AW1	172 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	CLK4	Q9HAZ1	481 aa	Known RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	ABT1	Q9ULW3	272 aa	Known RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	AK5	Q9Y6K8	562 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	COL4A3	Q01955	1670 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SH3PXD2B	A1X283	911 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	TNFRSF10B	O14763	440 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SNX2	O60749	519 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	CLASP2	O75122	1294 aa	Known RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	PROC	P04070	461 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SMIM10L2A	P0DMW4	78 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	SMIM10L2B	P0DMW5	78 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	CD1E	P15812	388 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	NRG1	Q02297	640 aa	Predicted RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	ZNF33A	Q06730	810 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	NAB1	Q13506	487 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	PYROXD2	Q8N2H3	581 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	TAB3	Q8N5C8	712 aa	Predicted RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	CATSPER1	Q8NEC5	780 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	UNK	Q9C0B0	810 aa	Known RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	KLHL4	Q9C0H6	718 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	STMN3	Q9NZ72	180 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	IL37	Q9NZH6	218 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	NOD1	Q9Y239	953 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	PSAT1	Q9Y617	370 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	PABPN1L	A6NDY0	278 aa	Known RBP	11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	TMEM114	B3SHH9	223 aa		11.08	□□□□□ -0.64
ILF3-208	ENST00000587928	TNFRSF10A	O00220	468 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms