RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 USP29Q9HBJ7 922 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 PRSS16Q9NQE7 514 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 MMP17Q9ULZ9 603 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 FCF1Q9Y324 198 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 SIT1Q9Y3P8 196 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 HEY1Q9Y5J3 304 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 RAD54BQ9Y620 910 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SPAG17Q6Q759 2223 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 GPR179Q6PRD1 2367 aa9.46□□□□□ -0.89
VPS35-211ENST00000569950 C10orf142B7Z368 130 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 CES2O00748 559 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 MATN3O15232 486 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 CEP104O60308 925 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 GPR37L1O60883 481 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 TMCC1O94876 653 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 PAPSS2O95340 614 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 FGGP02679 453 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 CTSLP07711 333 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 ZFXP17010 805 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 CCNCP24863 283 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 NTSR1P30989 418 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 CD68P34810 354 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 ETFBP38117 255 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 NR2C2P49116 596 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 CLCN6P51797 869 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 METAP1P53582 386 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 IFI35P80217 286 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 SATB1Q01826 763 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 SULT2A1Q06520 285 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 DLG2Q15700 870 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 KCTD19Q17RG1 926 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 INO80DQ53TQ3 878 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 ZFYVE27Q5T4F4 411 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 IL31Q6EBC2 164 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 ALG1LQ6GMV1 187 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 C22orf39Q6P5X5 142 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 Q6ZVU0 165 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 SYT13Q7L8C5 426 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 FBXL6Q8N531 539 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 FLCNQ8NFG4 579 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 OR2A12Q8NGT7 310 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 ACTRT1Q8TDG2 376 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 NKD2Q969F2 451 aaPredicted RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 ZNF599Q96NL3 588 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 FAM129BQ96TA1 746 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 MKRN2Q9H000 416 aaKnown RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 DNPEPQ9ULA0 475 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 MRPS17Q9Y2R5 130 aaKnown RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 WASF2Q9Y6W5 498 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 TNRC6BQ9UPQ9 1833 aaKnown RBP9.46□□□□□ -0.9
VPS35-211ENST00000569950 CEP192Q8TEP8 1941 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 LAMA1P25391 3075 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 ABCA7Q8IZY2 2146 aa9.46□□□□□ -0.9
VPS35-211ENST00000569950 SCN8AQ9UQD0 1980 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TTC24A2A3L6 582 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 KCNK1O00180 336 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 NPC1O15118 1278 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 INSIG1O15503 277 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 LIASO43766 372 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 SIN3BO75182 1162 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TJP3O95049 919 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 HLA-DQB2P05538 268 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ATP5BP06576 529 aaKnown RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 MMP2P08253 660 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 PTPN3P26045 913 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 GDF10P55107 478 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ZNF33AQ06730 810 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 SLC20A2Q08357 652 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 NIPAL4Q0D2K0 466 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 XRCC4Q13426 336 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 LRRC32Q14392 662 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 CRY1Q16526 586 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 CYP1B1Q16678 543 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 HSF5Q4G112 596 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 PREPLQ4J6C6 727 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 SLC45A4Q5BKX6 768 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ATXN7L2Q5T6C5 722 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 TMCO4Q5TGY1 634 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 RETSATQ6NUM9 610 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TTC27Q6P3X3 843 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ADAT2Q7Z6V5 191 aaKnown RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 ZC3H18Q86VM9 953 aaKnown RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 LRRC49Q8IUZ0 686 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 KLHDC8BQ8IXV7 354 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 PLPP6Q8IY26 295 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 SPEM1Q8N4L4 309 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ATPAF2Q8N5M1 289 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 GLIS1Q8NBF1 620 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TSEN2Q8NCE0 465 aaKnown RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 CHST14Q8NCH0 376 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ARRDC2Q8TBH0 407 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 C1orf54Q8WWF1 131 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 NELL1Q92832 810 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 PBXIP1Q96AQ6 731 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 FAM131CQ96AQ9 280 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ISG20Q96AZ6 181 aaKnown RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 TADA1Q96BN2 335 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TRIM44Q96DX7 344 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 ERLEC1Q96DZ1 483 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 PBKQ96KB5 322 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms