RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GALCP54803 685 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PARP15Q460N3 678 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 LINGO4Q6UY18 593 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 DGLUCYQ7Z3D6 616 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PLPP6Q8IY26 295 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 UMODL1-AS1Q8N2C9 162 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 ARFGAP1Q8N6T3 406 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 NIPA2Q8N8Q9 360 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 TMIEQ8NEW7 156 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 OR2T34Q8NGX1 318 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PIP4K2CQ8TBX8 421 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 CASKIN2Q8WXE0 1202 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 SNX19Q92543 992 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PPP1R16AQ96I34 528 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 SNRNP25Q9BV90 132 aaKnown RBP13.67□□□□□ -0.22
CLK3-213ENST00000563842 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 MIR1-1HGQ9H1L0 117 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 TMEM9BQ9NQ34 198 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 DYRK4Q9NR20 520 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 NDFIP2Q9NV92 336 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 UVRAGQ9P2Y5 699 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PPM1HQ9ULR3 514 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PCNX2A6NKB5 2137 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 CABIN1Q9Y6J0 2220 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 SHROOM3Q8TF72 1996 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 PCDH15Q96QU1 1955 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 SMAD6O43541 496 aaKnown RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 ENGP17813 658 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 MAOBP27338 520 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 CHRNA3P32297 505 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 ACVRL1P37023 503 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 ARL4AP40617 200 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 HCAR3P49019 387 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 NDST2P52849 883 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 ADKP55263 362 aaKnown RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 ARF5P84085 180 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 HADHQ16836 314 aaKnown RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 CARD16Q5EG05 197 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 KIAA0895LQ68EN5 471 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 AADATQ8N5Z0 425 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 OR2A12Q8NGT7 310 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 OR14C36Q8NHC7 312 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 PEBP4Q96S96 227 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 ANP32EQ9BTT0 268 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 TRIM7Q9C029 511 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 C6orf106Q9H6K1 298 aaPredicted RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 ZWILCHQ9H900 591 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 CAPN10Q9HC96 672 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 OSGEPQ9NPF4 335 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 CTTNBP2NLQ9P2B4 639 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 IL36AQ9UHA7 158 aa13.66□□□□□ -0.22
CLK3-213ENST00000563842 EIF2B4Q9UI10 523 aaKnown RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.66□□□□□ -0.22
CLK3-213ENST00000563842 PLXNA2O75051 1894 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 ANKRD36A6QL64 1941 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 FAM47DPA6NHR8 397 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 ARHGAP42A6NI28 874 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 RASA4BC9J798 803 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 H3BRJ5 948 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 K7ERQ8 282 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 ARHGAP33O14559 1287 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 BCAT2O15382 392 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 RASA4O43374 803 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 BUB1O43683 1085 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 FSBPO95073 299 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 CD27P26842 260 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 DRD3P35462 400 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 DNA2P51530 1060 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 CCR5P51681 352 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 SNRPD1P62314 119 aaKnown RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 TEAD4Q15561 434 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 ASTE1Q2TB18 679 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 INO80DQ53TQ3 878 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 PPP6R3Q5H9R7 873 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 NCEH1Q6PIU2 408 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 RFX8Q6ZV50 586 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 LZTR1Q8N653 840 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 ZNF564Q8TBZ8 553 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 TEKT4Q8WW24 435 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 BIRC7Q96CA5 298 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 LRIG1Q96JA1 1093 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 KCTD15Q96SI1 283 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 HEPHQ9BQS7 1158 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 TNKS2Q9H2K2 1166 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 NHEJ1Q9H9Q4 299 aaPredicted RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 RXFP3Q9NSD7 469 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 GPATCH2LQ9NWQ4 482 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 SERGEFQ9UGK8 458 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 NENFQ9UMX5 172 aa13.65□□□□□ -0.22
CLK3-213ENST00000563842 TPRP12270 2363 aaKnown RBP13.65□□□□□ -0.22
CLK3-213ENST00000563842 TBC1D3DA0A087WVF3 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3IA0A087WXS9 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3EA0A087X179 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3KA0A087X1G2 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3FA6NER0 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 C4orf47A7E2U8 309 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3LB9A6J9 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 KPNA3O00505 521 aaPredicted RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 GSRP00390 522 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms