RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 WASHC5Q12768 1159 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 NR1H3Q13133 447 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 GRM2Q14416 872 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 KLHL38Q2WGJ6 581 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 RABGAP1LQ5R372 815 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 GPR158Q5T848 1215 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 EMC10Q5UCC4 262 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 ZNF852Q6ZMS4 543 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 TPRG1Q6ZUI0 275 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 C14orf80Q86SX3 495 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 CNPY4Q8N129 248 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 ZNF567Q8N184 647 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 UMODL1-AS1Q8N2C9 162 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 FBXO36Q8NEA4 188 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 PJA1Q8NG27 643 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 SHKBP1Q8TBC3 707 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 LRRN4Q8WUT4 740 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 FOXQ1Q9C009 403 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 CNOT10Q9H9A5 744 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 LRRC4CQ9HCJ2 640 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 HAUS2Q9NVX0 235 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 TMEM248Q9NWD8 314 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 FETUBQ9UGM5 382 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 RSPH14Q9UHP6 348 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 SLC24A2Q9UI40 661 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 VANGL2Q9ULK5 521 aa9.12□□□□□ -0.95
VPS39-207ENST00000563692 AAR2Q9Y312 384 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.12□□□□□ -0.95
VPS39-207ENST00000563692 PTPRDP23468 1912 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 PATJQ8NI35 1801 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 IGLV3-10A0A075B6K4 115 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 EXOC1LA0A1B0GW35 172 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MAGEB16A2A368 324 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 SDR42E2A6NKP2 422 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 SMIM23A6NLE4 172 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 FAM170BA6NMN3 283 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 HEPACAM2A8MVW5 462 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 KCNK1O00180 336 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MAN2B1O00754 1011 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ACSL4O60488 711 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 GFRA3O60609 400 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TMEM63AO94886 807 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 CPP00450 1065 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 JCHAINP01591 159 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 CCNB1P14635 433 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 NR1D1P20393 614 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TACR2P21452 398 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 PTPN3P26045 913 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 DDX6P26196 483 aaKnown RBP eCLIP9.11□□□□□ -0.95
VPS39-207ENST00000563692 VIPR2P41587 438 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ELK3P41970 407 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MAGEA9P43362 315 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MAPKAPK2P49137 400 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 RENBPP51606 427 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 YBEYP58557 167 aaPredicted RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 PPP2R2AP63151 447 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ANGPT1Q15389 498 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TERF2Q15554 542 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 HP1BP3Q5SSJ5 553 aaPredicted RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 LGSNQ5TDP6 509 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 PIK3R6Q5UE93 754 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 RAP1GAP2Q684P5 730 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 FBXL22Q6P050 247 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 LRRC8BQ6P9F7 803 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ZC3H14Q6PJT7 736 aaKnown RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 KDM7AQ6ZMT4 941 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 CHSY1Q86X52 802 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TMC8Q8IU68 726 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ANKMY2Q8IV38 441 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 NPWQ8N729 165 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 PDCD7Q8N8D1 485 aaKnown RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 CSGALNACT1Q8TDX6 532 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MRPS31Q92665 395 aaKnown RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 FATE1Q969F0 183 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 CELF6Q96J87 481 aaKnown RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 TEKT5Q96M29 485 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ZSWIM3Q96MP5 696 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 RPRD1AQ96P16 312 aaPredicted RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 CYTH2Q99418 400 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 NAT9Q9BTE0 207 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 OSBPL6Q9BZF3 934 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 PLA2G2FQ9BZM2 168 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 SLC39A8Q9C0K1 460 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TASP1Q9H6P5 420 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 TRPV4Q9HBA0 871 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 MPP6Q9NZW5 540 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 ZC3H7BQ9UGR2 993 aaKnown RBP9.11□□□□□ -0.95
VPS39-207ENST00000563692 IKBKGQ9Y6K9 419 aa9.11□□□□□ -0.95
VPS39-207ENST00000563692 DOCK6Q96HP0 2047 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ZBTB24O43167 697 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 COCHO43405 550 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MAFKO60675 156 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MOSPD3O75425 235 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ANXA9O76027 345 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 LATS1O95835 1130 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 F11P03951 625 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MBL2P11226 248 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 PFKLP17858 780 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 FCARP24071 287 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 OR1E1P30953 314 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms