RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TSTD1Q8NFU3 115 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 UBE2Q2Q8WVN8 375 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 MKRN2Q9H000 416 aaKnown RBP22.18■■□□□ 1.14
SNX1-210ENST00000560260 CARD9Q9H257 536 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 LHX3Q9UBR4 397 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 EFR3BQ9Y2G0 817 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 FANCGO15287 622 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 NDUFV2P19404 249 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 GEMIN4P57678 1058 aaKnown RBP22.17■■□□□ 1.14
SNX1-210ENST00000560260 KLF1Q13351 362 aaPredicted RBP22.17■■□□□ 1.14
SNX1-210ENST00000560260 ANGPT1Q15389 498 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 INO80DQ53TQ3 878 aaPredicted RBP22.17■■□□□ 1.14
SNX1-210ENST00000560260 FAM182AQ5T1J6 154 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 ANO7Q6IWH7 933 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 RASSF3Q86WH2 238 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 CACUL1Q86Y37 369 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 STK40Q8N2I9 435 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 MDGA1Q8NFP4 955 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 OR2A12Q8NGT7 310 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 VOPP1Q96AW1 172 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 HDAC11Q96DB2 347 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 WDR24Q96S15 920 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 LGMNQ99538 433 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 TM6SF2Q9BZW4 377 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 CEP44Q9C0F1 390 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 SUN2Q9UH99 717 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 JRKLQ9Y4A0 524 aa22.17■■□□□ 1.14
SNX1-210ENST00000560260 TARSL2A2RTX5 802 aaKnown RBP22.16■■□□□ 1.14
SNX1-210ENST00000560260 RNF103O00237 685 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 SYNCRIPO60506 623 aaKnown RBP22.16■■□□□ 1.14
SNX1-210ENST00000560260 APBB3O95704 486 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 RGRP47804 291 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 CSTF1Q05048 431 aaKnown RBP22.16■■□□□ 1.14
SNX1-210ENST00000560260 SLC10A7Q0GE19 358 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 HS1BP3Q53T59 392 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 PCDH20Q8N6Y1 951 aaKnown RBP22.16■■□□□ 1.14
SNX1-210ENST00000560260 CHST14Q8NCH0 376 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 PRSS33Q8NF86 280 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 OR2T3Q8NH03 318 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 HMGB4Q8WW32 186 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 TSGA13Q96PP4 275 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 FAM129BQ96TA1 746 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 FAM118BQ9BPY3 351 aa22.16■■□□□ 1.14
SNX1-210ENST00000560260 POLMQ9NP87 494 aaPredicted RBP22.16■■□□□ 1.14
SNX1-210ENST00000560260 APOC4-APOC2K7ER74 178 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 MUSKO15146 869 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 BNIP3LO60238 219 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 APOC2P02655 101 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 MX2P20592 715 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 CXCR5P32302 372 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 GNG11P61952 73 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 PPIDQ08752 370 aaKnown RBP22.15■■□□□ 1.14
SNX1-210ENST00000560260 NOMO1Q15155 1222 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 ATXN7L2Q5T6C5 722 aaPredicted RBP22.15■■□□□ 1.14
SNX1-210ENST00000560260 SEL1L2Q5TEA6 688 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 TMCO4Q5TGY1 634 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 LRRC49Q8IUZ0 686 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 CASKIN2Q8WXE0 1202 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 MAML1Q92585 1016 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 ISG20Q96AZ6 181 aaKnown RBP22.15■■□□□ 1.14
SNX1-210ENST00000560260 EXOC2Q96KP1 924 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 MRGPRX1Q96LB2 322 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 ZNF599Q96NL3 588 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 CD93Q9NPY3 652 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 FBXO4Q9UKT5 387 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 R3HDM2Q9Y2K5 976 aaKnown RBP22.15■■□□□ 1.14
SNX1-210ENST00000560260 EML5Q05BV3 1969 aa22.15■■□□□ 1.14
SNX1-210ENST00000560260 CTSLP07711 333 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 CETN2P41208 172 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 NUBP1P53384 320 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 OTUD4Q01804 1114 aaKnown RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 LBRQ14739 615 aaKnown RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 PRKD1Q15139 912 aaPredicted RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 HEATR6Q6AI08 1181 aaKnown RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 DPY19L3Q6ZPD9 716 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 SLC13A5Q86YT5 568 aaPredicted RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 CCDC13Q8IYE1 715 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 PGBD5Q8N414 524 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 CAMKK1Q8N5S9 505 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 ACTL9Q8TC94 416 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 P3H4Q92791 437 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 TPSD1Q9BZJ3 242 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 RSPH9Q9H1X1 276 aaPredicted RBP22.14■■□□□ 1.14
SNX1-210ENST00000560260 ZKSCAN5Q9Y2L8 839 aa22.14■■□□□ 1.14
SNX1-210ENST00000560260 GJB3O75712 270 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 GSRP00390 522 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 SP9P0CG40 484 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 C7P10643 843 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 CCNCP24863 283 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 HOXA6P31267 233 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 GKP32189 559 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 NR2C2P49116 596 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 FNTBP49356 437 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 CCNHP51946 323 aaPredicted RBP22.13■■□□□ 1.13
SNX1-210ENST00000560260 METAP1P53582 386 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 RHOAP61586 193 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 RPS14P62263 151 aaKnown RBP22.13■■□□□ 1.13
SNX1-210ENST00000560260 ELAVL3Q14576 367 aaKnown RBP22.13■■□□□ 1.13
SNX1-210ENST00000560260 RFTN1Q14699 578 aaPredicted RBP22.13■■□□□ 1.13
SNX1-210ENST00000560260 PDK1Q15118 436 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms