RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SMG5Q9UPR3 1016 aaKnown RBP12.9□□□□□ -0.34
USP3-213ENST00000559711 CPQQ9Y646 472 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 FAM169AQ9Y6X4 670 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 ALPK3Q96L96 1907 aa12.9□□□□□ -0.34
USP3-213ENST00000559711 FAM47DPA6NHR8 397 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 TYROBPO43914 113 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 USP1O94782 785 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ARHGEF15O94989 841 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 EPHA5P54756 1037 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CYP4F8P98187 520 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 LBRQ14739 615 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 ANKRD20A4Q4UJ75 823 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 PPM1LQ5SGD2 360 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 LGSNQ5TDP6 509 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ARMC3Q5W041 872 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ZNF783Q6ZMS7 281 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 HTR3DQ70Z44 454 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MARK2Q7KZI7 788 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 ZNF771Q7L3S4 317 aaPredicted RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 ZNF354CQ86Y25 554 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CNPY4Q8N129 248 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MAB21L3Q8N8X9 362 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 IPMKQ8NFU5 416 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ARRDC2Q8TBH0 407 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 DENND1AQ8TEH3 1009 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SLC22A17Q8WUG5 538 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ALKBH8Q96BT7 664 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 FCRL3Q96P31 734 aaPredicted RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 APOL2Q9BQE5 337 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 KIFC1Q9BW19 673 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ACE2Q9BYF1 805 aaPredicted RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 ATXN3LQ9H3M9 355 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 KIF9Q9HAQ2 790 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ARNT2Q9HBZ2 717 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ATP13A1Q9HD20 1204 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ASAH2Q9NR71 780 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SOX13Q9UN79 622 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ZNF510Q9Y2H8 683 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 RPS6KL1Q9Y6S9 549 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ZCWPW2A0A1B0GU75 182 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 GMNCA6NCL1 334 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CCL16O15467 120 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 KDELR3O43731 214 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 TSPAN3O60637 253 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 LPXNO60711 386 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 KRT37O76014 449 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MMP2P08253 660 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SNRPAP09012 282 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 TPH1P17752 444 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 KRT4P19013 534 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 HOXA9P31269 272 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SERPINB9P50453 376 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 WNT3AP56704 352 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 DMTNQ08495 405 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MGAT5Q09328 741 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ALG1LQ6GMV1 187 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CXorf57Q6NSI4 855 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 SH2D5Q6ZV89 423 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SPRED2Q7Z698 418 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 UNC5BQ8IZJ1 945 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 PGBD5Q8N414 524 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP3-213ENST00000559711 OR7D4Q8NG98 312 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 BCAS4Q8TDM0 211 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MICAL1Q8TDZ2 1067 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CDKL2Q92772 493 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 SGSM3Q96HU1 749 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 GCNAQ96QF7 691 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 CORO1BQ9BR76 489 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 FICDQ9BVA6 458 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 PPANQ9NQ55 473 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 NKIRAS1Q9NYS0 192 aa12.89□□□□□ -0.35
USP3-213ENST00000559711 MYO18AQ92614 2054 aaKnown RBP12.89□□□□□ -0.35
USP3-213ENST00000559711 DOCK4Q8N1I0 1966 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 TRAV19A0A0A6YYK7 116 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 A0A1W2PRU2 124 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 NRG2O14511 850 aaPredicted RBP12.88□□□□□ -0.35
USP3-213ENST00000559711 GRM6O15303 877 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 ATP9BO43861 1147 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 UGT1A9O60656 530 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 PMPCBO75439 489 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 KRT38O76015 456 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 FGF19O95750 216 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 MT-ND3P03897 115 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 RHOCP08134 193 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 MYOGP15173 224 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 CNTFP26441 200 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 ETFBP38117 255 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 SEC24CP53992 1094 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 MAXP61244 160 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 SLC18A2Q05940 514 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 IHHQ14623 411 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 RFTN1Q14699 578 aaPredicted RBP12.88□□□□□ -0.35
USP3-213ENST00000559711 PCID2Q5JVF3 399 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 IL31Q6EBC2 164 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 POTEHQ6S545 545 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 CES3Q6UWW8 571 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 C4orf33Q8N1A6 199 aa12.88□□□□□ -0.35
USP3-213ENST00000559711 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP3-213ENST00000559711 HJURPQ8NCD3 748 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms