RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NLKQ9UBE8 527 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 POLG2Q9UHN1 485 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 VPS28Q9UK41 221 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 CORO1CQ9ULV4 474 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 SUFUQ9UMX1 484 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 INSL6Q9Y581 213 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 SIRT4Q9Y6E7 314 aaPredicted RBP1.77□□□□□ -2.13
USP3-209ENST00000558925 CAPN7Q9Y6W3 813 aa1.77□□□□□ -2.13
USP3-209ENST00000558925 TDRD9Q8NDG6 1382 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 SPATA31A1Q5TZJ5 1347 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 EMSYQ7Z589 1322 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CYP2D7A0A087X1C5 515 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GOLGA6L10A0A0M3HER8 536 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 hCG_1807616A0A1W2PRN6 198 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SLC22A23A1A5C7 686 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SYNDIG1LA6NDD5 238 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GAGE10A6NGK3 116 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 AGAP14A8MT82 685 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PTGES3LE9PB15 166 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 LIASO43766 372 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SLC25A17O43808 307 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CCNT1O60563 726 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 DDAH2O95865 285 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SCGB1D1O95968 90 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GALTP07902 379 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CHRM4P08173 479 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 HSPA1AP0DMV8 641 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 HSPA1BP0DMV9 641 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 FCGR2AP12318 317 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 LAMP2P13473 410 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 RARGP13631 454 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 COX7A2P14406 83 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 AKR1B1P15121 316 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PORP16435 677 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 HOXB9P17482 250 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 TGM2P21980 687 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TM4SF1P30408 202 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 HOXA7P31268 230 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 ACSL1P33121 698 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 KRT20P35900 424 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GJC1P36383 396 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GARSP41250 739 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 GPD2P43304 727 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 AVPR1BP47901 424 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CPA2P48052 419 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CTCFP49711 727 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 RARRES1P49788 294 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 NLRP5P59047 1200 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 HOXA4Q00056 320 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 MC1RQ01726 317 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GOLGA8FQ08AF8 430 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TMEM115Q12893 351 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 MTA1Q13330 715 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CUL4AQ13619 759 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 FRG1Q14331 258 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 PGM5Q15124 567 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 RPE65Q16518 533 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ME3Q16798 604 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PFKFB3Q16875 520 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 ERCC6LQ2NKX8 1250 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ALG11Q2TAA5 492 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 FAM153CQ494X1 144 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 KLHL22Q53GT1 634 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 KIAA1755Q5JYT7 1200 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 FAM171A1Q5VUB5 890 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TTI2Q6NXR4 508 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CEP85Q6P2H3 762 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 KRBA2Q6ZNG9 492 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CLEC17AQ6ZS10 378 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 IKBIPQ70UQ0 350 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SZRD1Q7Z422 152 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ZNF804AQ7Z570 1209 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 NEK8Q86SG6 692 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TRIM74Q86UV6 250 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TRIM73Q86UV7 250 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 FAM160B2Q86V87 743 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CCDC25Q86WR0 208 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CHSY1Q86X52 802 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 KLBQ86Z14 1044 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ADSSL1Q8N142 457 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GHDCQ8N2G8 530 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PAQR4Q8N4S7 273 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 TTC39CQ8N584 583 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ARL14EPQ8N8R7 260 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 PNLDC1Q8NA58 520 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 ADPRHL1Q8NDY3 354 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 DNAAF1Q8NEP3 725 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TNIP2Q8NFZ5 429 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 CADM4Q8NFZ8 388 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 OR52N4Q8NGI2 321 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 SPATA3Q8NHX4 192 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ETNPPLQ8TBG4 499 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ZCCHC10Q8TBK6 192 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 GDPD5Q8WTR4 605 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ZFPM2Q8WW38 1151 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 IGFBPL1Q8WX77 278 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 NCSTNQ92542 709 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 HSPH1Q92598 858 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 USP6NLQ92738 828 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PABPC5Q96DU9 382 aaKnown RBP1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms