RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 NUMA1Q14980 2115 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SHROOM3Q8TF72 1996 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 METTL12A8MUP2 240 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SLC7A4O43246 635 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 BUB1O43683 1085 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 RNASEH2AO75792 299 aaKnown RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 IPO7O95373 1038 aaKnown RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 GNSP15586 552 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 TCF4P15884 667 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SDHBP21912 280 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 FECHP22830 423 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 ITPKAP23677 461 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 CHRNA3P32297 505 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 ACSL1P33121 698 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SNRPD1P62314 119 aaKnown RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SERINC3Q13530 473 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 KRT81Q14533 505 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 TCEAL1Q15170 157 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 CCDC6Q16204 474 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 DUOXA1Q1HG43 343 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 AASDHQ4L235 1098 aaPredicted RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 INO80DQ53TQ3 878 aaPredicted RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 CARD16Q5EG05 197 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 PEAR1Q5VY43 1037 aaPredicted RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 POLNQ7Z5Q5 900 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 HDDC3Q8N4P3 179 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 TMIEQ8NEW7 156 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 PIP4K2CQ8TBX8 421 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 HMCESQ96FZ2 354 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 NEUROG2Q9H2A3 272 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 LRRC19Q9H756 370 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 RCOR3Q9P2K3 495 aaPredicted RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 SUSD2Q9UGT4 822 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 IL36AQ9UHA7 158 aa12.73□□□□□ -0.37
SLIRP-209ENST00000557342 EVLQ9UI08 416 aaPredicted RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 FCF1Q9Y324 198 aaKnown RBP12.73□□□□□ -0.37
SLIRP-209ENST00000557342 PIEZO1Q92508 2521 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 ANKRD36A6QL64 1941 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 ADAMTS9Q9P2N4 1935 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 LRRC72A6NJI9 287 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 CD160O95971 181 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 GSRP00390 522 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DNA2P51530 1060 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 CDH6P55285 790 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DPYSQ14117 519 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 MESDQ14696 234 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 PDK2Q15119 407 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DCAF12L1Q5VU92 463 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 TXNRD3NBQ6F5E7 133 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 TMCO3Q6UWJ1 677 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 MAP7D3Q8IWC1 876 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 AADATQ8N5Z0 425 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 OR2T34Q8NGX1 318 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 FAM71BQ8TC56 605 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DNASE2BQ8WZ79 361 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 PPP1R16AQ96I34 528 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 CELF6Q96J87 481 aaKnown RBP12.72□□□□□ -0.37
SLIRP-209ENST00000557342 LRIG1Q96JA1 1093 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 HEPHQ9BQS7 1158 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 NUSAP1Q9BXS6 441 aaKnown RBP12.72□□□□□ -0.37
SLIRP-209ENST00000557342 SLC39A8Q9C0K1 460 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 TNKS2Q9H2K2 1166 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 KDM4CQ9H3R0 1056 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 PCDH18Q9HCL0 1135 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DYRK4Q9NR20 520 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 SARDHQ9UL12 918 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 TPX2Q9ULW0 747 aaKnown RBP12.72□□□□□ -0.37
SLIRP-209ENST00000557342 PCDHA13Q9Y5I0 950 aa12.72□□□□□ -0.37
SLIRP-209ENST00000557342 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.72□□□□□ -0.37
SLIRP-209ENST00000557342 RIF1Q5UIP0 2472 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 ATXN2Q99700 1313 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 TP53BP1Q12888 1972 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 TMEM110-MUSTN1A8MSY1 372 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 KPNA3O00505 521 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 ZNF821O75541 412 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 NDUFA10O95299 355 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 AMPD1P23109 780 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 SERPINB6P35237 376 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 SLC1A1P43005 524 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 NOP2P46087 812 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 PAPOLAP51003 745 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 CCNHP51946 323 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 RAD51Q06609 339 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 SF3A2Q15428 464 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 TRIM61Q5EBN2 209 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 ARSIQ5FYB1 569 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 ZFYVE27Q5T4F4 411 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 AFMIDQ63HM1 303 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 SLC23A3Q6PIS1 610 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 DPY19L3Q6ZPD9 716 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 RYBPQ8N488 228 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 KCTD6Q8NC69 237 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 OR2AP1Q8NGE2 309 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 OR14C36Q8NHC7 312 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 NETO1Q8TDF5 533 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 TSC1Q92574 1164 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 FAM131CQ96AQ9 280 aa12.71□□□□□ -0.37
SLIRP-209ENST00000557342 CALR3Q96L12 384 aaKnown RBP12.71□□□□□ -0.37
SLIRP-209ENST00000557342 CSPG4P5Q96PW8 444 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms