RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CLDN16Q9Y5I7 305 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 MYMKA6NI61 221 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 SPTLC2O15270 562 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 NCAM2O15394 837 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 RNMTO43148 476 aaKnown RBP4.91□□□□□ -1.62
SCFD1-221ENST00000556534 ANP32CO43423 234 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 OAZ2O95190 189 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 CLDN7O95471 211 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 WEE2P0C1S8 567 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 CHRNB2P17787 502 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 SCP2P22307 547 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 TMPRSS3P57727 454 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 CHRNDQ07001 517 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 DUSP6Q16828 381 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 GORABQ5T7V8 394 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 TMEM268Q5VZI3 342 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 ATG16L1Q676U5 607 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 C9orf47Q6ZRZ4 202 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 SLC16A12Q6ZSM3 486 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 HORMAD2Q8N7B1 307 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 C7orf57Q8NEG2 295 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 BICD2Q8TD16 824 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 TTC12Q9H892 705 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-221ENST00000556534 KRCC1Q9NPI7 259 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-221ENST00000556534 TMEM160Q9NX00 188 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 RAI2Q9Y5P3 530 aa4.91□□□□□ -1.62
SCFD1-221ENST00000556534 DDTLA6NHG4 134 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 CBX6O95503 412 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 ADAP00813 363 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 PPM1FP49593 454 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 POLGP54098 1239 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 RAPGEF1Q13905 1077 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 TAF12Q16514 161 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 ME3Q16798 604 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 FBXO43Q4G163 708 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 EPHA10Q5JZY3 1008 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 WDR45BQ5MNZ6 344 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 WASHC2DQ5SRD0 308 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 DAB2IPQ5VWQ8 1189 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 CTU1Q7Z7A3 348 aaKnown RBP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 SERPINA11Q86U17 422 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 C9orf106Q8NAJ2 232 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 OR4N2Q8NGD1 307 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 GABPB2Q8TAK5 448 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 ASB5Q8WWX0 329 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 STAMQ92783 540 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 URB1-AS1Q96HZ7 61 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.9□□□□□ -1.63
SCFD1-221ENST00000556534 ISCUQ9H1K1 167 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 ATP8A2Q9NTI2 1148 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 SEL1LQ9UBV2 794 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 SUFUQ9UMX1 484 aa4.9□□□□□ -1.63
SCFD1-221ENST00000556534 C17orf102A2RUQ5 167 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 PLEKHD1A6NEE1 506 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 SH2D7A6NKC9 451 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-221ENST00000556534 STMND1H3BQB6 276 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 TNFRSF13BO14836 293 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-221ENST00000556534 MYZAPP0CAP1 466 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 CNTFP26441 200 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 YWHAQP27348 245 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 AVPR1AP37288 418 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 DPP6P42658 865 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 RFX2P48378 723 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 PPP3CCP48454 512 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 TRAF1Q13077 416 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 SLC18A3Q16572 532 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 ZNF354CQ86Y25 554 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 CAMK1DQ8IU85 385 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 ZDHHC23Q8IYP9 409 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 NSMCE1Q8WV22 266 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 RAB40AQ8WXH6 277 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 SH3KBP1Q96B97 665 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 POLDIP3Q9BY77 421 aaKnown RBP4.89□□□□□ -1.63
SCFD1-221ENST00000556534 TAOK3Q9H2K8 898 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 GGA3Q9NZ52 723 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 HSF4Q9ULV5 492 aa4.89□□□□□ -1.63
SCFD1-221ENST00000556534 I6L893 689 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 HSPB6O14558 160 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 PER2O15055 1255 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 SERPINC1P01008 464 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 LCATP04180 440 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 POLBP06746 335 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 CHRM4P08173 479 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 ARSBP15848 533 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 ARRB2P32121 409 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 FOXG1P55316 489 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 TLE2Q04725 743 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 SLC18A2Q05940 514 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 TBL3Q12788 808 aaKnown RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 UBAP2Q5T6F2 1119 aaKnown RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 HEPHL1Q6MZM0 1159 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 RETSATQ6NUM9 610 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 ZNF549Q6P9A3 640 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 GHDCQ8N2G8 530 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 CEP76Q8TAP6 659 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 USP13Q92995 863 aaPredicted RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 ZNF333Q96JL9 665 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 RBM38Q9H0Z9 239 aaKnown RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 EBF3Q9H4W6 596 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms