RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 HDDC3Q8N4P3 179 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 PCDH20Q8N6Y1 951 aaKnown RBP13.34□□□□□ -0.27
SHMT2-211ENST00000554310 OR2A12Q8NGT7 310 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 OR2T34Q8NGX1 318 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 ARHGEF2Q92974 986 aaKnown RBP13.34□□□□□ -0.27
SHMT2-211ENST00000554310 BIRC7Q96CA5 298 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 NEUROG2Q9H2A3 272 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 NDFIP2Q9NV92 336 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 DONSONQ9NYP3 566 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 DNAI1Q9UI46 699 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 AP4E1Q9UPM8 1137 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 CEP295Q9C0D2 2601 aa13.34□□□□□ -0.27
SHMT2-211ENST00000554310 PLXNA2O75051 1894 aa13.33□□□□□ -0.27
SHMT2-211ENST00000554310 KNL1Q8NG31 2342 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 ZSCAN5CA6NGD5 496 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 WASH4PA8MWX3 477 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 C10orf142B7Z368 130 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 KIF2AO00139 706 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 SMAD6O43541 496 aaKnown RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 CREB3O43889 395 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 BNIP3LO60238 219 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 PRPSAP2O60256 369 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 LRCH4O75427 683 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 FSBPO95073 299 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 PRNPP04156 253 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 IGHV4-34P06331 123 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TPM1P09493 284 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 CD27P26842 260 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 CHRNA3P32297 505 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 ACVRL1P37023 503 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 CCR5P51681 352 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 AFF3P51826 1226 aaKnown RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 ZNF135P52742 658 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TPI1P60174 286 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 GRIK2Q13002 908 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 ACAP1Q15027 740 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 POLD3Q15054 466 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 PARP15Q460N3 678 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 PPM1JQ5JR12 505 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 NCEH1Q6PIU2 408 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TMEM139Q8IV31 216 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 MINDY1Q8N5J2 469 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TC2NQ8N9U0 490 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 C1orf216Q8TAB5 229 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 PIP4K2CQ8TBX8 421 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 DNAJC7Q99615 494 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 GTPBP2Q9BX10 602 aaKnown RBP13.33□□□□□ -0.28
SHMT2-211ENST00000554310 MAGEB5Q9BZ81 275 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TRIM7Q9C029 511 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 KDM4CQ9H3R0 1056 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 ARHGAP20Q9P2F6 1191 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 MYO1AQ9UBC5 1043 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 HPCAL4Q9UM19 191 aa13.33□□□□□ -0.28
SHMT2-211ENST00000554310 TP53BP1Q12888 1972 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 A0A087X0T9 212 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 FAM47DPA6NHR8 397 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 AKR1B15C9JRZ8 316 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 ARHGAP6O43182 974 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 PLRG1O43660 514 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 OPHN1O60890 802 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 TUBB4AP04350 444 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 CTSLP07711 333 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 FAM228BP0C875 321 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 MIPP30301 263 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 PCK1P35558 622 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 GRIA4P48058 902 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 YBEYP58557 167 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 CCDC15Q0P6D6 951 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 TEAD4Q15561 434 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 ERMARDQ5T6L9 678 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 AGBL4Q5VU57 503 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 ALKBH5Q6P6C2 394 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 IL27RAQ6UWB1 636 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 NYAP1Q6ZVC0 841 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 UMODL1-AS1Q8N2C9 162 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 ARFGAP1Q8N6T3 406 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 TMIEQ8NEW7 156 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 OR14C36Q8NHC7 312 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 ISG20Q96AZ6 181 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 PPP1R16AQ96I34 528 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 PANX2Q96RD6 677 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 PEBP4Q96S96 227 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 SNRNP25Q9BV90 132 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 THAP2Q9H0W7 228 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 TNKS2Q9H2K2 1166 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 DHX35Q9H5Z1 703 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 FSCN3Q9NQT6 498 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 DNAAF2Q9NVR5 837 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 IL36AQ9UHA7 158 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 SARDHQ9UL12 918 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 NENFQ9UMX5 172 aa13.32□□□□□ -0.28
SHMT2-211ENST00000554310 FCF1Q9Y324 198 aaKnown RBP13.32□□□□□ -0.28
SHMT2-211ENST00000554310 A0A1W2PPC4 97 aa13.31□□□□□ -0.28
SHMT2-211ENST00000554310 MED19A0JLT2 244 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-211ENST00000554310 UPK3BL1B0FP48 263 aa13.31□□□□□ -0.28
SHMT2-211ENST00000554310 UPK3BL2E5RIL1 263 aa13.31□□□□□ -0.28
SHMT2-211ENST00000554310 EEF2KO00418 725 aaKnown RBP13.31□□□□□ -0.28
SHMT2-211ENST00000554310 KPNA3O00505 521 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-211ENST00000554310 KDELR3O43731 214 aa13.31□□□□□ -0.28
SHMT2-211ENST00000554310 ZNF821O75541 412 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms