RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 FATE1Q969F0 183 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 NAP1L3Q99457 506 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 FRMD8P1Q9BZ68 369 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 CEP44Q9C0F1 390 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 SMARCAL1Q9NZC9 954 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 SLC8A2Q9UPR5 921 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 FCF1Q9Y324 198 aaKnown RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 TECTAO75443 2155 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 HACD1B0YJ81 288 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 H7C0C1 242 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 SGK1O00141 431 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 PGRMC1O00264 195 aaKnown RBP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MATN3O15232 486 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF821O75541 412 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 HOXB2P14652 356 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MAGEA9P43362 315 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ATP5OP48047 213 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 SLC10A7Q0GE19 358 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 LBRQ14739 615 aaKnown RBP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 CYTH1Q15438 398 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 HNRNPA1L2Q32P51 320 aaKnown RBP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 SLC45A4Q5BKX6 768 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 C22orf39Q6P5X5 142 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 CREG2Q8IUH2 290 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF366Q8N895 744 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 SLC35B2Q8TB61 432 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 FRS2Q8WU20 508 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ATG4AQ8WYN0 398 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MAML1Q92585 1016 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF592Q92610 1267 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 ISG20Q96AZ6 181 aaKnown RBP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 CAPZA3Q96KX2 299 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 QKIQ96PU8 341 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHMT2-209ENST00000553949 IER2Q9BTL4 223 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MTG2Q9H4K7 406 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 DLGAP2Q9P1A6 1054 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 SUN2Q9UH99 717 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MMP17Q9ULZ9 603 aa12.46□□□□□ -0.41
SHMT2-209ENST00000553949 MIA3Q5JRA6 1907 aa12.46□□□□□ -0.42
SHMT2-209ENST00000553949 EDDM13A0A1B0GTR0 161 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 KCNK1O00180 336 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 LIASO43766 372 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 SYNCRIPO60506 623 aaKnown RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 EPHX1P07099 455 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 RBP3P10745 1247 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 CCNB1P14635 433 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 VAV1P15498 845 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 RENBPP51606 427 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 IFI35P80217 286 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 MTAPQ13126 283 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 HNRNPDQ14103 355 aaKnown RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 STARD3Q14849 445 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 CCNG2Q16589 344 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 C9orf64Q5T6V5 341 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 MARC1Q5VT66 337 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 DARS2Q6PI48 645 aaKnown RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 Q6ZVU0 165 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 SYT13Q7L8C5 426 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 CDKL3Q8IVW4 592 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 SPEM1Q8N4L4 309 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 FBXL6Q8N531 539 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 TEX26Q8N6G2 289 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 PCDH20Q8N6Y1 951 aaKnown RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 TMEM105Q8N8V8 129 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 C1orf54Q8WWF1 131 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 HTR3CQ8WXA8 447 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 PTPRN2Q92932 1015 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 ZNF419Q96HQ0 510 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 PSKH2Q96QS6 385 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 CINPQ9BW66 212 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 AP1M1Q9BXS5 423 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 TNKS2Q9H2K2 1166 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 C10orf88Q9H8K7 445 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 PRSS16Q9NQE7 514 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 POLR3BQ9NW08 1133 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-209ENST00000553949 RNF14Q9UBS8 474 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 SEPT3Q9UH03 358 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 DNPEPQ9ULA0 475 aa12.45□□□□□ -0.42
SHMT2-209ENST00000553949 CHD5Q8TDI0 1954 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 A0A1W2PQF6 199 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 BCLAF3A2AJT9 711 aaKnown RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 TARSL2A2RTX5 802 aaKnown RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 FAM86C2PA6NEL3 165 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 ESPNB1AK53 854 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 MTSS1O43312 755 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 SIN3BO75182 1162 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 JCHAINP01591 159 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 COL9A1P20849 921 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 RBL1P28749 1068 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 MMP13P45452 471 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 RHOAP61586 193 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 ZBTB17Q13105 803 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 CAMK2GQ13555 558 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 SNX1Q13596 522 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 BYSLQ13895 437 aaKnown RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 ZNF235Q14590 738 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 CRY1Q16526 586 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 HEATR6Q6AI08 1181 aaKnown RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 KIAA1211LQ6NV74 962 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 TMEM92Q6UXU6 159 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms