RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 POU5F2Q8N7G0 328 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 NT5C3BQ969T7 300 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 SLC13A1Q9BZW2 595 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FAM96AQ9H5X1 160 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 CEP350Q5VT06 3117 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 KANSL1LA0AUZ9 987 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 WDR27A2RRH5 827 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 UNCXA6NJT0 531 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 FAM72CH0Y354 149 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 DAB1O75553 588 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 SORBS2O94875 1100 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 BPGMP07738 259 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 MYL4P12829 197 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PTPN1P18031 435 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 MAP2K5Q13163 448 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 TUBB3Q13509 450 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 OLIG2Q13516 323 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 SMAD1Q15797 465 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 SV2CQ496J9 727 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 TCHHL1Q5QJ38 904 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 MROH9Q5TGP6 573 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 FAM72AQ5TYM5 149 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 FAM72DQ6L9T8 149 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 C16orf87Q6PH81 154 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 DHRS4L2Q6PKH6 230 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 CLEC20AQ6ZU45 233 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 FAM72BQ86X60 149 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 ADCY4Q8NFM4 1077 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PPP1R14CQ8TAE6 165 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 GSDMBQ8TAX9 411 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 ADAM32Q8TC27 787 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PIWIL2Q8TC59 973 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 RNF139Q8WU17 664 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 TFB1MQ8WVM0 346 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PPP1R10Q96QC0 940 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 NPY6RQ99463 290 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 CGREF1Q99674 301 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 CYP4F11Q9HBI6 524 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 XAB2Q9HCS7 855 aaKnown RBP12.46□□□□□ -0.41
SHMT2-207ENST00000553837 CRTAC1Q9NQ79 661 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PIGVQ9NUD9 493 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 PCDHA11Q9Y5I1 949 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 FADS3Q9Y5Q0 445 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 TSC2P49815 1807 aa12.46□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF236Q9UL36 1845 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 A0A0A0MRY4 1105 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 IQCA1LA6NCM1 817 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 SIN3BO75182 1162 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 NPR3P17342 541 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 ITGAXP20702 1163 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 PNPLA4P41247 253 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 CDK9P50750 372 aaKnown RBP12.46□□□□□ -0.42
SHMT2-207ENST00000553837 CRYBB1P53674 252 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-207ENST00000553837 NME3Q13232 169 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 CCDC153Q494R4 210 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 GPRIN1Q7Z2K8 1008 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 COLGALT1Q8NBJ5 622 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 LRRC39Q96DD0 335 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 P2RY11Q96G91 374 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 VPS50Q96JG6 964 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 SPATA13Q96N96 652 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 C20orf27Q9GZN8 174 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 PFDN4Q9NQP4 134 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 MOCS1Q9NZB8 636 aa12.46□□□□□ -0.42
SHMT2-207ENST00000553837 TDRKHQ9Y2W6 561 aaKnown RBP12.46□□□□□ -0.42
SHMT2-207ENST00000553837 MYADML2A6NDP7 307 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 M0QYT0 321 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 RNF103O00237 685 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 GABRDO14764 452 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ITM2AO43736 263 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 CRHR1P34998 444 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 MAP3K7CLP57077 242 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 NUP107P57740 925 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 POTEHQ6S545 545 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 RSPH3Q86UC2 560 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TOP6BLQ8N6T0 577 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TRPC4APQ8TEL6 797 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ARNTL2Q8WYA1 636 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TNIP3Q96KP6 325 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 MIOSQ9NXC5 875 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 RRN3Q9NYV6 651 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 BCAP29Q9UHQ4 241 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 PCDHGB4Q9UN71 923 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ARHGAP26Q9UNA1 814 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 PCDHGB5Q9Y5G0 923 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TIMM13Q9Y5L4 95 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-207ENST00000553837 LSM1O15116 133 aaKnown RBP12.45□□□□□ -0.42
SHMT2-207ENST00000553837 PRDX6P30041 224 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 LRPAP1P30533 357 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ARL4AP40617 200 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 PDAP1Q13442 181 aaKnown RBP12.45□□□□□ -0.42
SHMT2-207ENST00000553837 DPYSQ14117 519 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TWF2Q6IBS0 349 aaKnown RBP12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ZFP1Q6P2D0 407 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 C4orf22Q6V702 233 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 TRIML2Q8N7C3 387 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 C3orf58Q8NDZ4 430 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 WNT8BQ93098 351 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 ITPKCQ96DU7 683 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 SLC2A13Q96QE2 648 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms