RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SLC25A11Q02978 314 aaKnown RBP15.22■□□□□ 0.03
CUX1-214ENST00000550008 DNAJC14Q6Y2X3 702 aaPredicted RBP15.22■□□□□ 0.03
CUX1-214ENST00000550008 TMEM39AQ9NV64 488 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 PKD2L2Q9NZM6 624 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 C4AP0C0L4 1744 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 BCLAF3A2AJT9 711 aaKnown RBP15.22■□□□□ 0.03
CUX1-214ENST00000550008 TBX18O95935 607 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 RPLP2P05387 115 aaKnown RBP15.22■□□□□ 0.03
CUX1-214ENST00000550008 IQCF3P0C7M6 154 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 XRCC4Q13426 336 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 TTC23LQ6PF05 361 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 ADGRD1Q6QNK2 874 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 THUMPD3Q9BV44 507 aaKnown RBP15.22■□□□□ 0.03
CUX1-214ENST00000550008 TMEM109Q9BVC6 243 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 ZYG11BQ9C0D3 744 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 ZNF358Q9NW07 568 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 KCNK4Q9NYG8 393 aa15.22■□□□□ 0.03
CUX1-214ENST00000550008 MOXD2PA6NHM9 499 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 CXorf49A8MYA2 514 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 BTN3A1O00481 513 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 PBLDP30039 288 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 CLEC20AQ6ZU45 233 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 ADCK2Q7Z695 626 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 SETD3Q86TU7 594 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 CYGBQ8WWM9 190 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 ZBED3Q96IU2 234 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 CNBD2Q96M20 576 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 ACOX2Q99424 681 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 PRKD2Q9BZL6 878 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 RUBCNLQ9H714 662 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 ZNF395Q9H8N7 513 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 PNMA8BQ9ULN7 279 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 TTC36A6NLP5 189 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 SRRM3A6NNA2 597 aaPredicted RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 TFEBP19484 476 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 OASLQ15646 514 aaKnown RBP15.21■□□□□ 0.03
CUX1-214ENST00000550008 TTC7BQ86TV6 843 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 MIER2Q8N344 545 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 KYQ8NBH2 561 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 AGAP2Q99490 1192 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 C16orf70Q9BSU1 422 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 PLLPQ9Y342 182 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 DTNAQ9Y4J8 743 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 LTBP3Q9NS15 1303 aa15.21■□□□□ 0.03
CUX1-214ENST00000550008 TPBGLP0DKB5 382 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 KLRC2P26717 231 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 CHRNA4P43681 627 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 PHEXP78562 749 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 ZNF792Q3KQV3 632 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 POM121L1PQ3SYA9 428 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 OSTM1Q86WC4 334 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 DEFB118Q96PH6 123 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 TMEM106CQ9BVX2 250 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 ADGRE3Q9BY15 652 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 BCO2Q9BYV7 579 aa15.21■□□□□ 0.02
CUX1-214ENST00000550008 SEMA4BQ9NPR2 832 aaPredicted RBP15.21■□□□□ 0.02
CUX1-214ENST00000550008 ECHS1P30084 290 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 PLOD1Q02809 727 aaPredicted RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 TBCCQ15814 346 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 IYDQ6PHW0 289 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 NAT8LQ8N9F0 302 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CD99L2Q8TCZ2 262 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CLPTM1LQ96KA5 538 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 QKIQ96PU8 341 aaKnown RBP eCLIP15.2■□□□□ 0.026e-15■■■■□ 22.1
CUX1-214ENST00000550008 SF3B1O75533 1304 aaKnown RBP eCLIP15.2■□□□□ 0.024e-6■■■■■ 58.5
CUX1-214ENST00000550008 NRP1O14786 923 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 RTN3O95197 1032 aaPredicted RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 TOP3BO95985 862 aaKnown RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 DEFB115Q30KQ5 88 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 INTS6LQ5JSJ4 861 aaKnown RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 TAPT1Q6NXT6 567 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 C15orf39Q6ZRI6 1047 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CLNKQ7Z7G1 428 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 FBXO39Q8N4B4 442 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 RSPH1Q8WYR4 309 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 GLOD4Q9HC38 313 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 FGF10O15520 208 aaPredicted RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 PPP3CCP48454 512 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 INPP5AQ14642 412 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 NR6A1Q15406 480 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 DRICH1Q6PGQ1 229 aaPredicted RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 OLFML1Q6UWY5 402 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 MON1AQ86VX9 555 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CLEC4FQ8N1N0 589 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 STK32AQ8WU08 396 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CCDC126Q96EE4 140 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CHKBQ9Y259 395 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 PLCH1Q4KWH8 1693 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CNTRLQ7Z7A1 2325 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 MEIS3P2A8K0S8 358 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 BPGMP07738 259 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 MPP1Q00013 466 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 ZNF460Q14592 562 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 TEDDM1Q5T9Z0 273 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 SCARA3Q6AZY7 606 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 CACYBPQ9HB71 228 aaKnown RBP15.2■□□□□ 0.02
CUX1-214ENST00000550008 SYTL2Q9HCH5 934 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 SEPT3Q9UH03 358 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 C15orf41Q9Y2V0 281 aa15.2■□□□□ 0.02
CUX1-214ENST00000550008 COL16A1Q07092 1604 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms