RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SMAD6	O43541	496 aa	Known RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	TMCC1	O94876	653 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCNB1	P14635	433 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	HOXB2	P14652	356 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	RBL1	P28749	1068 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	MMP13	P45452	471 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	RENBP	P51606	427 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CLCN6	P51797	869 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	RHOA	P61586	193 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC10A7	Q0GE19	358 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	BYSL	Q13895	437 aa	Known RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	RFTN1	Q14699	578 aa	Predicted RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CYTH1	Q15438	398 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCNG2	Q16589	344 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC45A4	Q5BKX6	768 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	HEATR6	Q6AI08	1181 aa	Known RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545		Q6ZS52	159 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	GSTA5	Q7RTV2	222 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CREG2	Q8IUH2	290 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCDC105	Q8IYK2	499 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	SH2D3C	Q8N5H7	860 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	IL17RC	Q8NAC3	791 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	HTR3C	Q8WXA8	447 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	CCDC114	Q96M63	670 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	TM6SF2	Q9BZW4	377 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	TNKS2	Q9H2K2	1166 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	MTG2	Q9H4K7	406 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	EPHX3	Q9H6B9	360 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	PDF	Q9HBH1	243 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	HCN2	Q9UL51	889 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	DNPEP	Q9ULA0	475 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	HS3ST2	Q9Y278	367 aa		10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.34	□□□□□ -0.75
CPSF7-221	ENST00000543545	EDDM13	A0A1B0GTR0	161 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CXorf51A	A0A1B0GTR3	108 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	SGK1	O00141	431 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	KCNN4	O15554	427 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PI15	O43692	258 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	LIAS	O43766	372 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ATP9B	O43861	1147 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF500	O60304	480 aa	Predicted RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF189	O75820	626 aa	Predicted RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	SLC34A2	O95436	690 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CD160	O95971	181 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	IFNB1	P01574	187 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PRKCH	P24723	683 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	SNRPD1	P62314	119 aa	Known RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF33A	Q06730	810 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	FZD5	Q13467	585 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	HNRNPD	Q14103	355 aa	Known RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PRKD1	Q15139	912 aa	Predicted RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	HSF5	Q4G112	596 aa	Predicted RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CARD16	Q5EG05	197 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	C22orf39	Q6P5X5	142 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545		Q6ZVU0	165 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PID1	Q7Z2X4	250 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF687	Q8N1G0	1237 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PCDH20	Q8N6Y1	951 aa	Known RBP	10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PAF1	Q8N7H5	531 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	PRELID2	Q8N945	189 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	FAM71D	Q8N9W8	422 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	KDM1B	Q8NB78	822 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	SLC35B2	Q8TB61	432 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	AGAP3	Q96P47	875 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CEP41	Q9BYV8	373 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CEP44	Q9C0F1	390 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	TMEM245	Q9H330	911 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	NT5M	Q9NPB1	228 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	CDC23	Q9UJX2	597 aa		10.33	□□□□□ -0.76
CPSF7-221	ENST00000543545	BCLAF3	A2AJT9	711 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	TARSL2	A2RTX5	802 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CFAP69	A5D8W1	941 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	RNF103	O00237	685 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	RNASEH1	O60930	286 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SIN3B	O75182	1162 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	IGSF6	O95976	241 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	PEX11B	O96011	259 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	VAV1	P15498	845 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	AOC1	P19801	751 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	STIP1	P31948	543 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	ACTN2	P35609	894 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	HSPA9	P38646	679 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	MAGEA9	P43362	315 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	KCNJ1	P48048	391 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	VASP	P50552	380 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SCNN1B	P51168	640 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CLCN5	P51795	746 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	MAX	P61244	160 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	IFI35	P80217	286 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	RAD51	Q06609	339 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CKAP4	Q07065	602 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	TUBB2A	Q13885	445 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SIX1	Q15475	284 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	FAM182A	Q5T1J6	154 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms