RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SARDHQ9UL12 918 aa21.05■□□□□ 0.96
VPS28-206ENST00000526734 SMAD6O43541 496 aaKnown RBP21.04■□□□□ 0.96
VPS28-206ENST00000526734 LATO43561 262 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 SKILP12757 684 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 GLDCP23378 1020 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 TRIM14Q14142 442 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 ACAP1Q15027 740 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 POLD3Q15054 466 aaPredicted RBP21.04■□□□□ 0.96
VPS28-206ENST00000526734 PARP15Q460N3 678 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 SLC45A4Q5BKX6 768 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 AGBL4Q5VU57 503 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 HGSNATQ68CP4 663 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 ADAT2Q7Z6V5 191 aaKnown RBP21.04■□□□□ 0.96
VPS28-206ENST00000526734 ORAI3Q9BRQ5 295 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 IL36AQ9UHA7 158 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 DMTF1Q9Y222 760 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 PCDHGB2Q9Y5G2 931 aa21.04■□□□□ 0.96
VPS28-206ENST00000526734 CNOT1A5YKK6 2376 aaKnown RBP21.04■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3DA0A087WVF3 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3IA0A087WXS9 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3EA0A087X179 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3KA0A087X1G2 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 A0A1B0GVT2 93 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3FA6NER0 549 aaPredicted RBP21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3LB9A6J9 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 VILLO15195 856 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 ATMINO43313 823 aaPredicted RBP21.03■□□□□ 0.96
VPS28-206ENST00000526734 CREB3O43889 395 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 DFNA5O60443 496 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3HP0C7X1 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 ACVRL1P37023 503 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 CSNK1EP49674 416 aaKnown RBP21.03■□□□□ 0.96
VPS28-206ENST00000526734 CNTN1Q12860 1018 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 CARD16Q5EG05 197 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 N4BP2L1Q5TBK1 243 aaPredicted RBP21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3GQ6DHY5 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3CQ6IPX1 549 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 NEK5Q6P3R8 708 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TRIM69Q86WT6 500 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TBC1D3Q8IZP1 549 aaPredicted RBP21.03■□□□□ 0.96
VPS28-206ENST00000526734 PYROXD2Q8N2H3 581 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 DEFB124Q8NES8 71 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 LRIG1Q96JA1 1093 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 TSPY26PQ9H489 355 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 GAREM1Q9H706 876 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 NDFIP2Q9NV92 336 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 AP4E1Q9UPM8 1137 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 DNAH14Q0VDD8 3507 aa21.03■□□□□ 0.96
VPS28-206ENST00000526734 NUMA1Q14980 2115 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 KPNA3O00505 521 aaPredicted RBP21.02■□□□□ 0.96
VPS28-206ENST00000526734 KDELR3O43731 214 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 PRPSAP2O60256 369 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 GYPCP04921 128 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 CTSLP07711 333 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 CD59P13987 128 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 C21orf59P57076 290 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 TPI1P60174 286 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 ZNF252P-AS1Q0IIN9 211 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 DPY19L3Q6ZPD9 716 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 PRPF39Q86UA1 669 aaKnown RBP21.02■□□□□ 0.96
VPS28-206ENST00000526734 UMODL1-AS1Q8N2C9 162 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 HEPHQ9BQS7 1158 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.02■□□□□ 0.96
VPS28-206ENST00000526734 HDAC8Q9BY41 377 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 TNKS2Q9H2K2 1166 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 ANKRD6Q9Y2G4 727 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 SPTBN2O15020 2390 aa21.02■□□□□ 0.96
VPS28-206ENST00000526734 ZNF821O75541 412 aaPredicted RBP21.01■□□□□ 0.95
VPS28-206ENST00000526734 GSRP00390 522 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 PMLP29590 882 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 HNRNPH3P31942 346 aaKnown RBP21.01■□□□□ 0.95
VPS28-206ENST00000526734 PCK1P35558 622 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 METAP1P53582 386 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 BNC1Q01954 994 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 HLA-BQ31612 363 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 INO80DQ53TQ3 878 aaPredicted RBP21.01■□□□□ 0.95
VPS28-206ENST00000526734 ERMARDQ5T6L9 678 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 NAPEPLDQ6IQ20 393 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 ZSCAN30Q86W11 494 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 OR2I1PQ8NGU4 316 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 CPLX3Q8WVH0 158 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 MAGEB5Q9BZ81 275 aa21.01■□□□□ 0.95
VPS28-206ENST00000526734 XPO4Q9C0E2 1151 aaKnown RBP21.01■□□□□ 0.95
VPS28-206ENST00000526734 CD160O95971 181 aa21■□□□□ 0.95
VPS28-206ENST00000526734 ITGB7P26010 798 aa21■□□□□ 0.95
VPS28-206ENST00000526734 CD38P28907 300 aa21■□□□□ 0.95
VPS28-206ENST00000526734 DNA2P51530 1060 aa21■□□□□ 0.95
VPS28-206ENST00000526734 CCNHP51946 323 aaPredicted RBP21■□□□□ 0.95
VPS28-206ENST00000526734 NEK3P51956 506 aa21■□□□□ 0.95
VPS28-206ENST00000526734 NDST2P52849 883 aa21■□□□□ 0.95
VPS28-206ENST00000526734 SNRPD1P62314 119 aaKnown RBP21■□□□□ 0.95
VPS28-206ENST00000526734 SHC2P98077 582 aa21■□□□□ 0.95
VPS28-206ENST00000526734 OVGP1Q12889 678 aa21■□□□□ 0.95
VPS28-206ENST00000526734 SUZ12Q15022 739 aaKnown RBP21■□□□□ 0.95
VPS28-206ENST00000526734 KIF19Q2TAC6 998 aa21■□□□□ 0.95
VPS28-206ENST00000526734 SETMARQ53H47 684 aaPredicted RBP21■□□□□ 0.95
VPS28-206ENST00000526734 PIP5KL1Q5T9C9 394 aa21■□□□□ 0.95
VPS28-206ENST00000526734 ERN2Q76MJ5 926 aaKnown RBP21■□□□□ 0.95
VPS28-206ENST00000526734 ZNF354CQ86Y25 554 aa21■□□□□ 0.95
VPS28-206ENST00000526734 CHST14Q8NCH0 376 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms