RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	SATB1	Q01826	763 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	ITSN1	Q15811	1721 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	TRIM60	Q495X7	471 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	RAB11FIP2	Q7L804	512 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	BHLHA9	Q7RTU4	235 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	GALNT4	Q8N4A0	578 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	TTC30B	Q8N4P2	665 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	CEP70	Q8NHQ1	597 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	PPP1R9B	Q96SB3	815 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	REEP2	Q9BRK0	252 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	ABHD16B	Q9H3Z7	469 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	NOD2	Q9HC29	1040 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	HACL1	Q9UJ83	578 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	DRG1	Q9Y295	367 aa	Known RBP	5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	CYP46A1	Q9Y6A2	500 aa		5.1	□□□□□ -1.59
SREK1-213	ENST00000523655	SPTBN5	Q9NRC6	3674 aa	Known RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	EIF3A	Q14152	1382 aa	Known RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	ACE	P12821	1306 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655		H7C1Q1	480 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	AGPS	O00116	658 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	PPEF2	O14830	753 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	COQ9	O75208	318 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	PMPCB	O75439	489 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	BCAR3	O75815	825 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	RASAL1	O95294	804 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	SGPL1	O95470	568 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	CSF1	P09603	554 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	XRCC6	P12956	609 aa	Known RBP eCLIP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	HGF	P14210	728 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	GLUL	P15104	373 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	AKR1B1	P15121	316 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	TPH1	P17752	444 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	ITGB6	P18564	788 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	HOXD13	P35453	343 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	MMP13	P45452	471 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	COPB1	P53618	953 aa	Known RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	ROR1	Q01973	937 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	SMAD1	Q15797	465 aa	Known RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	BAK1	Q16611	211 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	TTC22	Q5TAA0	569 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	CACHD1	Q5VU97	1274 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	ATG16L1	Q676U5	607 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	TMCO3	Q6UWJ1	677 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	RRAGA	Q7L523	313 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	NRSN1	Q8IZ57	195 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	USP38	Q8NB14	1042 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	CREB3L4	Q8TEY5	395 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	FAM83D	Q9H4H8	585 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	WDR26	Q9H7D7	661 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	RNF186	Q9NXI6	227 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	TBC1D29	Q9UFV1	150 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	AMFR	Q9UKV5	643 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	C19orf53	Q9UNZ5	99 aa	Predicted RBP	5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	CNPY2	Q9Y2B0	182 aa		5.09	□□□□□ -1.59
SREK1-213	ENST00000523655	CEP290	O15078	2479 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CYP2D7	A0A087X1C5	515 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A18P	A6NE21	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A16P	A6NEW6	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	AQP7P3	A6NL99	342 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A9P	A6NNJ1	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A5P	A8MXJ8	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655		B4DLN1	442 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	PTP4A3	O75365	173 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	BMP15	O95972	392 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	DLD	P09622	509 aa	Known RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A15P	P0C7V4	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM90A14P	P0C7W9	464 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	ATP5F1	P24539	256 aa	Predicted RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	KLRK1	P26718	216 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	HOXD9	P28356	352 aa	Predicted RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	GK	P32189	559 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	PTGER1	P34995	402 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CCT4	P50991	539 aa	Known RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CCR9	P51686	369 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	LMAN2	Q12907	356 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	ANKRD1	Q15327	319 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FAM187B	Q17R55	369 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	INSC	Q1MX18	579 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CFAP58	Q5T655	872 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	MFSD4B	Q5TF39	518 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	FBXO46	Q6PJ61	603 aa	Predicted RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	TMTC3	Q6ZXV5	915 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	B4GALNT4	Q76KP1	1039 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CHD1L	Q86WJ1	897 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	RASGRP3	Q8IV61	690 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	SPART	Q8N0X7	666 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	NGEF	Q8N5V2	710 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	DEFB123	Q8N688	67 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	SIRT6	Q8N6T7	355 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	RNF125	Q96EQ8	232 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	EPS8L2	Q9H6S3	715 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	CHODL	Q9H9P2	273 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	KRT84	Q9NSB2	600 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	TRNAU1AP	Q9NX07	287 aa	Known RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	DNMT3B	Q9UBC3	853 aa	Known RBP	5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	GIMAP2	Q9UG22	337 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	VPS28	Q9UK41	221 aa		5.08	□□□□□ -1.6
SREK1-213	ENST00000523655	DERA	Q9Y315	318 aa		5.08	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms