RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ARMCX6Q7L4S7 300 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 POLNQ7Z5Q5 900 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RABEPKQ7Z6M1 372 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 ARHGAP12Q8IWW6 846 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 PCDH20Q8N6Y1 951 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 ATP11CQ8NB49 1132 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 CHST14Q8NCH0 376 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 TEKT4Q8WW24 435 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 OR8D1Q8WZ84 308 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 TSC1Q92574 1164 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 BIRC7Q96CA5 298 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 MRFAP1L1Q96HT8 127 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 SPON2Q9BUD6 331 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 NUP85Q9BW27 656 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 PACSIN1Q9BY11 444 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 KDM4CQ9H3R0 1056 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 CATSPERBQ9H7T0 1116 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 NHEJ1Q9H9Q4 299 aaPredicted RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 PDFQ9HBH1 243 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 GPATCH2LQ9NWQ4 482 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 CWC15Q9P013 229 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 UVRAGQ9P2Y5 699 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 MYO1AQ9UBC5 1043 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 PCSK1NQ9UHG2 260 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 IP6K2Q9UHH9 426 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 SLC6A14Q9UN76 642 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 PCDH15Q96QU1 1955 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 A0A1W2PP55 124 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 ZSCAN5CA6NGD5 496 aaPredicted RBP9.9□□□□□ -0.82
RNF4-221ENST00000513643 UPK3BL1B0FP48 263 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 RASA4BC9J798 803 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 AKR1B15C9JRZ8 316 aaPredicted RBP9.9□□□□□ -0.82
RNF4-221ENST00000513643 UPK3BL2E5RIL1 263 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 RASA4O43374 803 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 PLRG1O43660 514 aaKnown RBP9.9□□□□□ -0.82
RNF4-221ENST00000513643 CREB3O43889 395 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 PRPSAP2O60256 369 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 H2AFZP0C0S5 128 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 TMEM253P0C7T8 217 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 RARAP10276 462 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 DESP17661 470 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 ERCC2P18074 760 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CD27P26842 260 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 ZNF75DP51815 510 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 ADPRHP54922 357 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CARD16Q5EG05 197 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 SYCP2LQ5T4T6 812 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 PIP5KL1Q5T9C9 394 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 FAM46CQ5VWP2 391 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 DAB2IPQ5VWQ8 1189 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 KIAA0895LQ68EN5 471 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 H2AFVQ71UI9 128 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 DSG4Q86SJ6 1040 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 FAM124AQ86V42 546 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CACUL1Q86Y37 369 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CNGA4Q8IV77 575 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 HDDC3Q8N4P3 179 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 OR2T34Q8NGX1 318 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 PIP4K2CQ8TBX8 421 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CASKIN2Q8WXE0 1202 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 HMCESQ96FZ2 354 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 BTBD6Q96KE9 485 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 HDAC8Q9BY41 377 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 DONSONQ9NYP3 566 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 SUSD2Q9UGT4 822 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 INTUQ9ULD6 942 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 TPX2Q9ULW0 747 aaKnown RBP9.9□□□□□ -0.82
RNF4-221ENST00000513643 NCKAP1Q9Y2A7 1128 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 MFHAS1Q9Y4C4 1052 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CEP295Q9C0D2 2601 aa9.9□□□□□ -0.82
RNF4-221ENST00000513643 CEP192Q8TEP8 1941 aa9.9□□□□□ -0.83
RNF4-221ENST00000513643 ATXN2Q99700 1313 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 A0A1B0GTW7 788 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 A0A1W2PPC4 97 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 MYO1FO00160 1098 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 EEF2KO00418 725 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 ARHGAP33O14559 1287 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 PRAMEF11O60813 436 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 RNASEH2AO75792 299 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 PROSCO94903 275 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 PEX11BO96011 259 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 GSRP00390 522 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 IL1BP01584 269 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 ENGP17813 658 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 MAN1A1P33908 653 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 PSMD8P48556 350 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 GEMIN4P57678 1058 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 TPI1P60174 286 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CNTN1Q12860 1018 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CYTH1Q15438 398 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 ACCSLQ4AC99 568 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 AASDHQ4L235 1098 aaPredicted RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 KCNT1Q5JUK3 1230 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 IL31Q6EBC2 164 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 NCEH1Q6PIU2 408 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 DBX2Q6ZNG2 339 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 ERMP1Q7Z2K6 904 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CPNE8Q86YQ8 564 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 NPWQ8N729 165 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 C12orf50Q8NA57 414 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms