RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 HDAC11Q96DB2 347 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 EXOC2Q96KP1 924 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 CAPZA3Q96KX2 299 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 GABRG3Q99928 467 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 CINPQ9BW66 212 aaPredicted RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 TM6SF2Q9BZW4 377 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 C10orf88Q9H8K7 445 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 MUC22E2RYF6 1773 aaPredicted RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 NYNRINQ9P2P1 1898 aaKnown RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 EDDM13A0A1B0GTR0 161 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 KCNK1O00180 336 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 DLL1O00548 723 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 MCF2LO15068 1137 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 SIN3BO75182 1162 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 NEBLO76041 1014 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 PEX11BO96011 259 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 TCP1P17987 556 aaKnown RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 CCNCP24863 283 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 CLCN6P51797 869 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 RHOAP61586 193 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 SATB1Q01826 763 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 PPIDQ08752 370 aaKnown RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 SNX1Q13596 522 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 ENPP2Q13822 863 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 ZNF235Q14590 738 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 LBRQ14739 615 aaKnown RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 HNRNPA1L2Q32P51 320 aaKnown RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 HSF5Q4G112 596 aaPredicted RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 ATXN7L2Q5T6C5 722 aaPredicted RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 TMCO4Q5TGY1 634 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 MARC1Q5VT66 337 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 PAPD7Q5XG87 772 aaKnown RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 TMEM92Q6UXU6 159 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 SYT13Q7L8C5 426 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 CACUL1Q86Y37 369 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 LRRC49Q8IUZ0 686 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 RYBPQ8N488 228 aaPredicted RBP12.11□□□□□ -0.47
CUX1-210ENST00000497815 SPEM1Q8N4L4 309 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.11□□□□□ -0.47
CUX1-210ENST00000497815 KDM1BQ8NB78 822 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 TTC13Q8NBP0 860 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 FRS2Q8WU20 508 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 C1orf54Q8WWF1 131 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 ATG4AQ8WYN0 398 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 TSGA13Q96PP4 275 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 HHIPQ96QV1 700 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 CEP41Q9BYV8 373 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 PRSS16Q9NQE7 514 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 SUN2Q9UH99 717 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 TTLL3Q9Y4R7 772 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 SAR1BQ9Y6B6 198 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 TECTAO75443 2155 aa12.11□□□□□ -0.47
CUX1-210ENST00000497815 A0A1W2PQF6 199 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 TCRBV21S2A2A0A5A6 115 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 PGRMC1O00264 195 aaKnown RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 MATN3O15232 486 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 ZNF821O75541 412 aaPredicted RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 JCHAINP01591 159 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 RBP3P10745 1247 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 CCNB1P14635 433 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 AVPR2P30518 371 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 MAGEA9P43362 315 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 MMP13P45452 471 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 RECQLP46063 649 aaPredicted RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 CXCL12P48061 93 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 ITKQ08881 620 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 RFTN1Q14699 578 aaPredicted RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 PRKD1Q15139 912 aaPredicted RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 CRY1Q16526 586 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 INO80DQ53TQ3 878 aaPredicted RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 SLC45A4Q5BKX6 768 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 TMEM31Q5JXX7 168 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 C9orf64Q5T6V5 341 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 DARS2Q6PI48 645 aaKnown RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 STK40Q8N2I9 435 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 RASGEF1CQ8N431 466 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 TSEN2Q8NCE0 465 aaKnown RBP12.1□□□□□ -0.47
CUX1-210ENST00000497815 TSTD1Q8NFU3 115 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 OR6K2Q8NGY2 324 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 MAIP1Q8WWC4 291 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 CASKIN2Q8WXE0 1202 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 PTPRN2Q92932 1015 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 ZNF599Q96NL3 588 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 QKIQ96PU8 341 aaKnown RBP eCLIP12.1□□□□□ -0.476e-15■■■■□ 22.1
CUX1-210ENST00000497815 AP1M1Q9BXS5 423 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 CEP44Q9C0F1 390 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 BRD8Q9H0E9 1235 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 SLC6A17Q9H1V8 727 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 NT5MQ9NPB1 228 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 RBM22Q9NW64 420 aaKnown RBP eCLIP12.1□□□□□ -0.47
CUX1-210ENST00000497815 LHX3Q9UBR4 397 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 SEPT3Q9UH03 358 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 BDP1A6H8Y1 2624 aa12.1□□□□□ -0.47
CUX1-210ENST00000497815 TRIOO75962 3097 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 CXorf51AA0A1B0GTR3 108 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 TTC24A2A3L6 582 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 TARSL2A2RTX5 802 aaKnown RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 PRR33A8MZF0 331 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 HACD1B0YJ81 288 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms