RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ARF5P84085 180 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 PRAMEF14Q5SWL7 426 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 NAPEPLDQ6IQ20 393 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 CAVIN1Q6NZI2 390 aaKnown RBP23.5■■□□□ 1.35
COL9A3-213ENST00000489045 DNAJC24Q6P3W2 148 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 NLRP14Q86W24 1093 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 TRIM69Q86WT6 500 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 TMIEQ8NEW7 156 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 GRIN3AQ8TCU5 1115 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 ADAMTS14Q8WXS8 1223 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 ARRDC3Q96B67 414 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 CDC6Q99741 560 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 PREBQ9HCU5 417 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 MSRB2Q9Y3D2 182 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 A0A1B0GTQ1 180 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 TCRBV5S1A1TA0A578 114 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 SIGLEC16A6NMB1 481 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 RNF103O00237 685 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 LRIG2O94898 1065 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 PRNPP04156 253 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 PLEKP08567 350 aaPredicted RBP23.49■■□□□ 1.35
COL9A3-213ENST00000489045 CCDC172P0C7W6 258 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 RHOQP17081 205 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 ACVRL1P37023 503 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 GRK6P43250 576 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 RECQLP46063 649 aaPredicted RBP23.49■■□□□ 1.35
COL9A3-213ENST00000489045 SLC45A4Q5BKX6 768 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 DPY19L3Q6ZPD9 716 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 SLCO6A1Q86UG4 719 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 NTAN1Q96AB6 310 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 TBC1D31Q96DN5 1066 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 MCEEQ96PE7 176 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 ELF4Q99607 663 aaPredicted RBP23.49■■□□□ 1.35
COL9A3-213ENST00000489045 CEP44Q9C0F1 390 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 RTN4Q9NQC3 1192 aaKnown RBP23.49■■□□□ 1.35
COL9A3-213ENST00000489045 DYRK4Q9NR20 520 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 TMEM248Q9NWD8 314 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 IL36AQ9UHA7 158 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 DNAI1Q9UI46 699 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 ACTL7AQ9Y615 435 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 SPEGQ15772 3267 aa23.49■■□□□ 1.35
COL9A3-213ENST00000489045 COL5A1P20908 1838 aaPredicted RBP23.48■■□□□ 1.35
COL9A3-213ENST00000489045 SMTNL1A8MU46 457 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 CCP110O43303 1012 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 ZNF821O75541 412 aaPredicted RBP23.48■■□□□ 1.35
COL9A3-213ENST00000489045 NUDT1P36639 197 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 MAPKAPK2P49137 400 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 SLC20A2Q08357 652 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 ARSIQ5FYB1 569 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 IRF2BP2Q7Z5L9 587 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 PCDH20Q8N6Y1 951 aaKnown RBP23.48■■□□□ 1.35
COL9A3-213ENST00000489045 BAP1Q92560 729 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 RETREG1Q9H6L5 497 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 GDF3Q9NR23 364 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 TOR4AQ9NXH8 423 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 DMTF1Q9Y222 760 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 FCF1Q9Y324 198 aaKnown RBP23.48■■□□□ 1.35
COL9A3-213ENST00000489045 WASF2Q9Y6W5 498 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 PLXNB3Q9ULL4 1909 aa23.48■■□□□ 1.35
COL9A3-213ENST00000489045 FAM221BA6H8Z2 402 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ANKRD62A6NC57 917 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 TLR4O00206 839 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 RNGTTO60942 597 aaKnown RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 LEFTY1O75610 366 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ATXN1LP0C7T5 689 aaKnown RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ETFBP38117 255 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ZNF143P52747 638 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 NXPH1P58417 271 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 RPL7AP62424 266 aaKnown RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 SCAPQ12770 1279 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 SETMARQ53H47 684 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ACAD10Q6JQN1 1059 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 SLFN11Q7Z7L1 901 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 GATAD2AQ86YP4 633 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 ARHGEF2Q92974 986 aaKnown RBP23.47■■□□□ 1.35
COL9A3-213ENST00000489045 MYO6Q9UM54 1294 aa23.47■■□□□ 1.35
COL9A3-213ENST00000489045 CD160O95971 181 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 DNA2P51530 1060 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 CCDC15Q0P6D6 951 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 SHBQ15464 509 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 INAVAQ3KP66 663 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 PPP1R15BQ5SWA1 713 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 SCYL2Q6P3W7 929 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 ERN2Q76MJ5 926 aaKnown RBP23.46■■□□□ 1.35
COL9A3-213ENST00000489045 MCOLN2Q8IZK6 566 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 PYROXD2Q8N2H3 581 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 MFSD2AQ8NA29 543 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 PPP1R16AQ96I34 528 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 SYT11Q9BT88 431 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 TAS2R14Q9NYV8 317 aa23.46■■□□□ 1.35
COL9A3-213ENST00000489045 TMEM8BA6NDV4 472 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 LRRC53A6NM62 1247 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 GOLGA8CPA6NN73 597 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 TNFAIP3P21580 790 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 ZNF165P49910 485 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 CCNHP51946 323 aaPredicted RBP23.45■■□□□ 1.34
COL9A3-213ENST00000489045 FILIP1LQ4L180 1135 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 CARD16Q5EG05 197 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 EFHC2Q5JST6 749 aa23.45■■□□□ 1.34
COL9A3-213ENST00000489045 KDF1Q8NAX2 398 aaPredicted RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms