RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 AXIN1O15169 862 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 SMAD6O43541 496 aaKnown RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 MFSD11O43934 449 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 CNR2P34972 360 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 FNTBP49356 437 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 SFSWAPQ12872 951 aaKnown RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 BYSLQ13895 437 aaKnown RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 PPP2R5EQ16537 467 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 USP39Q53GS9 565 aaKnown RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 C9orf64Q5T6V5 341 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 MEI1Q5TIA1 1274 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 SLC9A4Q6AI14 798 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 TIGD7Q6NT04 549 aaPredicted RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 C22orf39Q6P5X5 142 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 Q6ZVU0 165 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 LONP2Q86WA8 852 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 REXO1L1PQ8IX06 675 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 STK40Q8N2I9 435 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 PCDH20Q8N6Y1 951 aaKnown RBP16.03■□□□□ 0.16
C9orf3-219ENST00000488186 GANCQ8TET4 914 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 P3H4Q92791 437 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 PTPRN2Q92932 1015 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 SIPA1Q96FS4 1042 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 HES6Q96HZ4 224 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 TNKS2Q9H2K2 1166 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 EBF1Q9UH73 591 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 PYCARDQ9ULZ3 195 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 ACTL7AQ9Y615 435 aa16.03■□□□□ 0.16
C9orf3-219ENST00000488186 hCG_1818297A0A087WSY0 165 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 DDX3YO15523 660 aaKnown RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 LILRB5O75023 590 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 TMCC1O94876 653 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 TJP3O95049 919 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 MAP3K6O95382 1288 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 DNTTP04053 509 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 PYGMP11217 842 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 GABRG2P18507 467 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 NR2C2P49116 596 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 RHOAP61586 193 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 SNRPD1P62314 119 aaKnown RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 GBE1Q04446 702 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 RAD51Q06609 339 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 RFTN1Q14699 578 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 PDK1Q15118 436 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 CARD16Q5EG05 197 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ZNF569Q5MCW4 686 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 SEL1L2Q5TEA6 688 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ZNF776Q68DI1 518 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ARHGAP36Q6ZRI8 547 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 TP53INP2Q8IXH6 220 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 PLD5Q8N7P1 536 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 MDGA1Q8NFP4 955 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 FRS2Q8WU20 508 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ALG3Q92685 438 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ATOH1Q92858 354 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ISG20Q96AZ6 181 aaKnown RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 TRIM44Q96DX7 344 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 ZNF599Q96NL3 588 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 CINPQ9BW66 212 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-219ENST00000488186 OSBPL8Q9BZF1 889 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 TPSD1Q9BZJ3 242 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 HAUS2Q9NVX0 235 aa16.02■□□□□ 0.16
C9orf3-219ENST00000488186 VPS13AQ96RL7 3174 aa16.02■□□□□ 0.15
C9orf3-219ENST00000488186 RIF1Q5UIP0 2472 aaKnown RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 PPP1R12AO14974 1030 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 IL1BP01584 269 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 C7P10643 843 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 VAV1P15498 845 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 NDUFV2P19404 249 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 TGM2P21980 687 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 GARSP41250 739 aaKnown RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 RENBPP51606 427 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 GALNT2Q10471 571 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 ZNF211Q13398 564 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 ELAVL3Q14576 367 aaKnown RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 ZNF235Q14590 738 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 TAZQ16635 292 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 TMCO4Q5TGY1 634 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 FAM46CQ5VWP2 391 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 WDR5BQ86VZ2 330 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 RASSF3Q86WH2 238 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 CACUL1Q86Y37 369 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 MMAAQ8IVH4 418 aaKnown RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 MRGPRX1Q96LB2 322 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 TM6SF2Q9BZW4 377 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 SLC6A17Q9H1V8 727 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 DTLQ9NZJ0 730 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 HECAQ9UBI9 543 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-219ENST00000488186 RAPGEFL1Q9UHV5 662 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 NCKAP1Q9Y2A7 1128 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 EFR3BQ9Y2G0 817 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 NUP205Q92621 2012 aa16.01■□□□□ 0.15
C9orf3-219ENST00000488186 SPAG17Q6Q759 2223 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 C1QTNF3-AMACRE9PGA6 284 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 KCNK3O14649 394 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 MCF2LO15068 1137 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 ALOX15BO15296 676 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 MAFKO60675 156 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 ZNF217O75362 1048 aa16■□□□□ 0.15
C9orf3-219ENST00000488186 CD160O95971 181 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms