RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 PLS3P13797 630 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 MUTP22033 750 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 LMO2P25791 158 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 YWHAQP27348 245 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TNFRSF8P28908 595 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CDC25AP30304 524 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 PNPLA4P41247 253 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 KIR2DL2P43627 348 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 RXRGP48443 463 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 LHX1P48742 406 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CACNA2D1P54289 1103 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 MFAP3P55082 362 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 NXPH1P58417 271 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CYP4F2P78329 520 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ASIC1P78348 528 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 AUHQ13825 339 aaKnown RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TOB2Q14106 344 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CLCA4Q14CN2 919 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TGIF1Q15583 401 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TBR1Q16650 682 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ISXQ2M1V0 245 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CRTC3Q6UUV7 619 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 SERPINA13PQ6UXR4 307 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 C1orf186Q6ZWK4 172 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 HTR3DQ70Z44 454 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 KANSL1Q7Z3B3 1105 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 LSRQ86X29 649 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 SRRM1Q8IYB3 904 aaKnown RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TMEM86AQ8N2M4 240 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ZNF366Q8N895 744 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ZNF564Q8TBZ8 553 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 GANCQ8TET4 914 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 FBXO32Q969P5 355 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 P2RY11Q96G91 374 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ATXN7L3BQ96GX2 97 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 PRR11Q96HE9 360 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 PCED1BQ96HM7 432 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CEP295NLQ96MC4 621 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 FERD3LQ96RJ6 166 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 SYT15Q9BQS2 421 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 PLCD4Q9BRC7 762 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CIPCQ9C0C6 399 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 ASB7Q9H672 318 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 SGK2Q9HBY8 427 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 CRTAC1Q9NQ79 661 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 GEMIN8Q9NWZ8 242 aaKnown RBP5.59□□□□□ -1.51
PTPN4-210ENST00000485247 SNX14Q9Y5W7 946 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 PLXNA2O75051 1894 aa5.59□□□□□ -1.51
PTPN4-210ENST00000485247 TLN1Q9Y490 2541 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 TP53BP1Q12888 1972 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 NBASA2RRP1 2371 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SPTBN1Q01082 2364 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SSU72P8A0A1W2PR75 194 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 A0A1W2PR77 199 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 GABRDO14764 452 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 AGFG2O95081 481 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 TNFSF15O95150 251 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ZNF205O95201 554 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 DNTTP04053 509 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ITGB3P05106 788 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 KRT19P08727 400 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 THEGLP0DJG4 465 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 IMPDH2P12268 514 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 CASRP41180 1078 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 PMS1P54277 932 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 RPS14P62263 151 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 TFAMQ00059 246 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ARID5AQ03989 594 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 KIR3DS1Q14943 382 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 MAPRE1Q15691 268 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ZNF174Q15697 407 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SOWAHAQ2M3V2 549 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 HS1BP3Q53T59 392 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SLC39A4Q6P5W5 647 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 NCEH1Q6PIU2 408 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 LCNL1Q6ZST4 164 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 CEP128Q6ZU80 1094 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SPATS2Q86XZ4 545 aaKnown RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 LRRC56Q8IYG6 542 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SLC25A45Q8N413 288 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ARL14Q8N4G2 192 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 RBBP8NLQ8NC74 664 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 HPS3Q969F9 1004 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SERAC1Q96JX3 654 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 FCRL2Q96LA5 508 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-210ENST00000485247 C8orf48Q96LL4 319 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 TM9SF2Q99805 663 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ERVMER34-1Q9H9K5 563 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 TMEM30AQ9NV96 361 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ERVK13-1Q9NX77 482 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ELOVL2Q9NXB9 296 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 KCNG1Q9UIX4 513 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 FBXO10Q9UK96 956 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 CDH9Q9ULB4 789 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 DNM3Q9UQ16 869 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 SLC27A6Q9Y2P4 619 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 ITPR2Q14571 2701 aa5.58□□□□□ -1.52
PTPN4-210ENST00000485247 NPHP3-ACAD11A0A0J9YXS1 232 aa5.57□□□□□ -1.52
PTPN4-210ENST00000485247 VPS37CA5D8V6 355 aaPredicted RBP5.57□□□□□ -1.52
PTPN4-210ENST00000485247 FADS2P1A8MWK0 482 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms