RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MKS1Q9NXB0 559 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 PLLPQ9Y342 182 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 NUMBLQ9Y6R0 609 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 PRRC2BQ5JSZ5 2229 aaKnown RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 FAM92AA1XBS5 289 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 NCAM2O15394 837 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 PMPCBO75439 489 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 SERPINB3P29508 390 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 HOXC13P31276 330 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 SARNPP82979 210 aaKnown RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 NADSYN1Q6IA69 706 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 KIAA1841Q6NSI8 718 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 ENDOVQ8N8Q3 282 aaKnown RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 RTL3Q8N8U3 475 aaKnown RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 PTCD3Q96EY7 689 aaKnown RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 IGSF21Q96ID5 467 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 NSL1Q96IY1 281 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 IL37Q9NZH6 218 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 NKX1-2Q9UD57 310 aaPredicted RBP14.7□□□□□ -0.06
CHD3-211ENST00000481999 TBX21Q9UL17 535 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 MYLKQ15746 1914 aa14.7□□□□□ -0.06
CHD3-211ENST00000481999 SLC38A8A6NNN8 435 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 LMNAP02545 664 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 GNAZP19086 355 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 CCNFP41002 786 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 KRT72Q14CN4 511 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 NAA25Q14CX7 972 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 PCSK7Q16549 785 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 LRRC26Q2I0M4 334 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 ANKS3Q6ZW76 656 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 PABPC5Q96DU9 382 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 PAWRQ96IZ0 340 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 BTBD10Q9BSF8 475 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 MRPL9Q9BYD2 267 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 ZNF395Q9H8N7 513 aaPredicted RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 EIF2B3Q9NR50 452 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 TPBGLP0DKB5 382 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 GM2AP17900 193 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 NMBRP28336 390 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 NIPAL4Q0D2K0 466 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 SLC10A7Q0GE19 358 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 POU6F1Q14863 301 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 PPM1JQ5JR12 505 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 CES4AQ5XG92 561 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 ATG16L1Q676U5 607 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 MSANTD2Q6P1R3 559 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 ACVR1CQ8NER5 493 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 OR52K2Q8NGK3 314 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 SPPL2BQ8TCT7 592 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 WBP2Q969T9 261 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 PSMG2Q969U7 264 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 ZNF512Q96ME7 567 aaPredicted RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 C7orf26Q96N11 449 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 MIPEPQ99797 713 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 TRIM62Q9BVG3 475 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 DENND2DQ9H6A0 471 aaPredicted RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 CATSPERBQ9H7T0 1116 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 TLR8Q9NR97 1041 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 GKN1Q9NS71 199 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 ARL8BQ9NVJ2 186 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 RBM22Q9NW64 420 aaKnown RBP eCLIP14.69□□□□□ -0.06
CHD3-211ENST00000481999 IPO11Q9UI26 975 aaKnown RBP14.69□□□□□ -0.06
CHD3-211ENST00000481999 DOCK6Q96HP0 2047 aa14.69□□□□□ -0.06
CHD3-211ENST00000481999 CCDC195A0A1B0GUA6 201 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 ALDOAP04075 364 aaKnown RBP14.68□□□□□ -0.06
CHD3-211ENST00000481999 MLNP12872 115 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 PGAM1P18669 254 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 ETFBP38117 255 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 IKBKEQ14164 716 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 HSP90AA5PQ58FG0 334 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 CMC1Q7Z7K0 106 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 RPRD1AQ96P16 312 aaPredicted RBP14.68□□□□□ -0.06
CHD3-211ENST00000481999 CADM1Q9BY67 442 aaKnown RBP14.68□□□□□ -0.06
CHD3-211ENST00000481999 ZCWPW2A0A1B0GU75 182 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 MYL2P10916 166 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 SLC6A4P31645 630 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 ACVRL1P37023 503 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 SERPINB9P50453 376 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 FAM91A1Q658Y4 838 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 STEAP4Q687X5 459 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 C16orf46Q6P387 395 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 OTOP2Q7RTS6 562 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 RASSF3Q86WH2 238 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.68□□□□□ -0.06
CHD3-211ENST00000481999 PRDM16Q9HAZ2 1276 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 CASS4Q9NQ75 786 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 FBXO6Q9NRD1 293 aaPredicted RBP14.68□□□□□ -0.06
CHD3-211ENST00000481999 KCNK4Q9NYG8 393 aa14.68□□□□□ -0.06
CHD3-211ENST00000481999 A0A0D9SEW6 157 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 C2orf78A6NCI8 922 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 TRIM43BA6NCK2 446 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 ALDH1A2O94788 518 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 PEX11BO96011 259 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 SGSHP51688 502 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 DLG2Q15700 870 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 USP41Q3LFD5 358 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 SLC8B1Q6J4K2 584 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 PACS1Q6VY07 963 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 NDUFAF2Q8N183 169 aa14.67□□□□□ -0.06
CHD3-211ENST00000481999 ARMC2Q8NEN0 867 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms