RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	PCDH8	O95206	1070 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	MT-CO1	P00395	513 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	SERPING1	P05155	500 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	GZMA	P12544	262 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	SPINK2	P20155	84 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	CD27	P26842	260 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	MAT2A	P31153	395 aa	Known RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	CHRNA3	P32297	505 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	PRKCI	P41743	596 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	CSNK1E	P49674	416 aa	Known RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	SERPINH1	P50454	418 aa	Known RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLC20A2	Q08357	652 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZNF252P-AS1	Q0IIN9	211 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	MAMLD1	Q13495	774 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZFYVE27	Q5T4F4	411 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FAM72A	Q5TYM5	149 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FAM72D	Q6L9T8	149 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	BNIPL	Q7Z465	357 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FAM72B	Q86X60	149 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZNF683	Q8IZ20	524 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	PYROXD2	Q8N2H3	581 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	AADAT	Q8N5Z0	425 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	SETD7	Q8WTS6	366 aa	Known RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FRS2	Q8WU20	508 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	CENPI	Q92674	756 aa	Predicted RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	ACE2	Q9BYF1	805 aa	Predicted RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	MAGEH1	Q9H213	219 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	GAREM1	Q9H706	876 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	TM9SF3	Q9HD45	589 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	TMEM248	Q9NWD8	314 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	GPATCH2L	Q9NWQ4	482 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	ADAMTS1	Q9UHI8	967 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FZD10	Q9ULW2	581 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	AP4E1	Q9UPM8	1137 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	FCF1	Q9Y324	198 aa	Known RBP	11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	OR51B4	Q9Y5P0	310 aa		11.77	□□□□□ -0.53
CPNE1-222	ENST00000473373	PCNX2	A6NKB5	2137 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	DDX3X	O00571	662 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	NEMP1	O14524	444 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	FGF10	O15520	208 aa	Predicted RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	SMAD6	O43541	496 aa	Known RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CASP14	P31944	242 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	L1CAM	P32004	1257 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ACVRL1	P37023	503 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ADPRH	P54922	357 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	SNRPD1	P62314	119 aa	Known RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	NRG1	Q02297	640 aa	Predicted RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	RAD51	Q06609	339 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	SCAP	Q12770	1279 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CNTN1	Q12860	1018 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	FOXC1	Q12948	553 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	COL9A2	Q14055	689 aa	Predicted RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	TRIM14	Q14142	442 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARSI	Q5FYB1	569 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CCDC122	Q5T0U0	273 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ERMARD	Q5T6L9	678 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	E4F1	Q66K89	784 aa	Predicted RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	FBXL19	Q6PCT2	694 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	LEKR1	Q6ZMV7	388 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	PCDH20	Q8N6Y1	951 aa	Known RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	RTL3	Q8N8U3	475 aa	Known RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARHGEF2	Q92974	986 aa	Known RBP	11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	SERAC1	Q96JX3	654 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	NCAPG	Q9BPX3	1015 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ANP32E	Q9BTT0	268 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	MAGEB5	Q9BZ81	275 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CEP44	Q9C0F1	390 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	TTYH3	Q9C0H2	523 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	RETREG1	Q9H6L5	497 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZMIZ1	Q9ULJ6	1067 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CAPN11	Q9UMQ6	739 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	FRY	Q5TBA9	3013 aa		11.76	□□□□□ -0.53
CPNE1-222	ENST00000473373	CACNA1G	O43497	2377 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373		A0A1W2PPC4	97 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	KRIT1	O00522	736 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLC7A4	O43246	635 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	TOP3B	O95985	862 aa	Known RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	CEACAM1	P13688	526 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	HOXB3	P14651	431 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	XPA	P23025	273 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARL4A	P40617	200 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	GRIA4	P48058	902 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	VASP	P50552	380 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	RHOA	P61586	193 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	RACK1	P63244	317 aa	Known RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SUZ12	Q15022	739 aa	Known RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SETMAR	Q53H47	684 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	CARD16	Q5EG05	197 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	CFAP58	Q5T655	872 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	PLEKHA7	Q6IQ23	1121 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	LAYN	Q6UX15	382 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	UNQ6494/PRO21346	Q6UXR6	183 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	CHST14	Q8NCH0	376 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	HSPH1	Q92598	858 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SYN2	Q92777	582 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLC6A18	Q96N87	628 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	HEPH	Q9BQS7	1158 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SNRNP25	Q9BV90	132 aa	Known RBP	11.75	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms