RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 SUSD2Q9UGT4 822 aa17.71■□□□□ 0.43
USP39-208ENST00000455732 LCMT1Q9UIC8 334 aa17.71■□□□□ 0.43
USP39-208ENST00000455732 TMEM131Q92545 1883 aa17.71■□□□□ 0.43
USP39-208ENST00000455732 MEI4A8MW99 385 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 K7ERQ8 282 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 MYO1FO00160 1098 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 MID1O15344 667 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 SMAD6O43541 496 aaKnown RBP17.7■□□□□ 0.42
USP39-208ENST00000455732 H2AFZP0C0S5 128 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 TMEM253P0C7T8 217 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 IL1R2P27930 398 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 SLC8A1P32418 973 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 PSMD8P48556 350 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 HCAR3P49019 387 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 ZNF75DP51815 510 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 YBEYP58557 167 aaPredicted RBP17.7■□□□□ 0.42
USP39-208ENST00000455732 POLD3Q15054 466 aaPredicted RBP17.7■□□□□ 0.42
USP39-208ENST00000455732 DPYSL2Q16555 572 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 PARP15Q460N3 678 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 BOLA3Q53S33 107 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 DAB2IPQ5VWQ8 1189 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 H2AFVQ71UI9 128 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 TC2NQ8N9U0 490 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 OR2A12Q8NGT7 310 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 ZNF564Q8TBZ8 553 aaPredicted RBP17.7■□□□□ 0.42
USP39-208ENST00000455732 CCDC42Q96M95 316 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 PACSIN1Q9BY11 444 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 C6orf106Q9H6K1 298 aaPredicted RBP17.7■□□□□ 0.42
USP39-208ENST00000455732 FBXL12Q9NXK8 326 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 SERGEFQ9UGK8 458 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 PPM1HQ9ULR3 514 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 NCKAP1Q9Y2A7 1128 aa17.7■□□□□ 0.42
USP39-208ENST00000455732 ZSCAN5CA6NGD5 496 aaPredicted RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 C10orf142B7Z368 130 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 EEF2KO00418 725 aaKnown RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 ARHGAP33O14559 1287 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 ZNF821O75541 412 aaPredicted RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 SEMA4FO95754 770 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 CD160O95971 181 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 IL1BP01584 269 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 GNSP15586 552 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 GOT1P17174 413 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 MAPK8P45983 427 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 SLC25A11Q02978 314 aaKnown RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 FAM46CQ5VWP2 391 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 RFX8Q6ZV50 586 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 AADATQ8N5Z0 425 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 PCDH20Q8N6Y1 951 aaKnown RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 TEKT4Q8WW24 435 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 ISG20Q96AZ6 181 aaKnown RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 EIF2B4Q9UI10 523 aaKnown RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 HPCAL4Q9UM19 191 aa17.69■□□□□ 0.42
USP39-208ENST00000455732 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 FARP1Q9Y4F1 1045 aaPredicted RBP17.69■□□□□ 0.42
USP39-208ENST00000455732 A0A1B0GTW7 788 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 A0A1W2PP55 124 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 RASA4BC9J798 803 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 C1QTNF3-AMACRE9PGA6 284 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 RASA4O43374 803 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 KDELR3O43731 214 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 KCNK5O95279 499 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 TCF4P15884 667 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 DRD3P35462 400 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 NDST2P52849 883 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 PLPP6Q8IY26 295 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 ZCCHC9Q8N567 271 aaKnown RBP17.68■□□□□ 0.42
USP39-208ENST00000455732 TMIEQ8NEW7 156 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 BTBD6Q96KE9 485 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 LRRC19Q9H756 370 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 CTTNBP2NLQ9P2B4 639 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 SARDHQ9UL12 918 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 SLCO1B1Q9Y6L6 691 aa17.68■□□□□ 0.42
USP39-208ENST00000455732 BCAT2O15382 392 aaPredicted RBP17.67■□□□□ 0.42
USP39-208ENST00000455732 SLC7A4O43246 635 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 RNASEH2AO75792 299 aaKnown RBP17.67■□□□□ 0.42
USP39-208ENST00000455732 SYPP08247 313 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 CHRNA3P32297 505 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 MAN1A1P33908 653 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 RECQLP46063 649 aaPredicted RBP17.67■□□□□ 0.42
USP39-208ENST00000455732 SERINC3Q13530 473 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 DPYSQ14117 519 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 UAP1L1Q3KQV9 507 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 PPP6R3Q5H9R7 873 aaPredicted RBP17.67■□□□□ 0.42
USP39-208ENST00000455732 KCNT1Q5JUK3 1230 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 HDDC3Q8N4P3 179 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 MINDY1Q8N5J2 469 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 PIP4K2CQ8TBX8 421 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 GANCQ8TET4 914 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 CASKIN2Q8WXE0 1202 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 BIRC7Q96CA5 298 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 HMCESQ96FZ2 354 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 OMDQ99983 421 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 GTPBP2Q9BX10 602 aaKnown RBP17.67■□□□□ 0.42
USP39-208ENST00000455732 KLC2Q9H0B6 622 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 MIR1-1HGQ9H1L0 117 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 NEUROG2Q9H2A3 272 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 ZWILCHQ9H900 591 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.67■□□□□ 0.42
USP39-208ENST00000455732 SPTLC3Q9NUV7 552 aa17.67■□□□□ 0.42
USP39-208ENST00000455732 CWC15Q9P013 229 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms