RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TOMM70O94826 608 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 HNRNPCP07910 306 aaKnown RBP eCLIP12.05□□□□□ -0.48
MSH6-204ENST00000445503 YWHAHQ04917 246 aaPredicted RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 INCA1Q0VD86 236 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 NAB1Q13506 487 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 FUT11Q495W5 492 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 HSF5Q4G112 596 aaPredicted RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 PITRM1Q5JRX3 1037 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 FASTKD5Q7L8L6 764 aaKnown RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 C1orf21Q9H246 121 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 RNF39Q9H2S5 420 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 IPO11Q9UI26 975 aaKnown RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 CCL22O00626 93 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 RTN3O95197 1032 aaPredicted RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 PNPLA4P41247 253 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 NPY2RP49146 381 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 MYO1HQ8N1T3 1032 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 FSTL5Q8N475 847 aaPredicted RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 RP9Q8TA86 221 aaKnown RBP12.05□□□□□ -0.48
MSH6-204ENST00000445503 ATP6V1E2Q96A05 226 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 IL22Q9GZX6 179 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 NDUFA13Q9P0J0 144 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 ADAMTS5Q9UNA0 930 aa12.05□□□□□ -0.48
MSH6-204ENST00000445503 ZBTB42B2RXF5 422 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 FAM72CH0Y354 149 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ENDOD1O94919 500 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 MAPRE2Q15555 327 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 FAM72AQ5TYM5 149 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 FAM72DQ6L9T8 149 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 TIFABQ6ZNK6 161 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 SH2D5Q6ZV89 423 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 TFAP2DQ7Z6R9 452 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 FAM72BQ86X60 149 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 MROH8Q9H579 483 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 EML4Q9HC35 981 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 C6orf203Q9P0P8 240 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 ZDHHC2Q9UIJ5 367 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 AP4S1Q9Y587 144 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 KIF13BQ9NQT8 1826 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 MRASO14807 208 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ANGPT2O15123 496 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 H2AFYO75367 372 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 AP2A1O95782 977 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ITGBL1O95965 494 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 CD151P48509 253 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 MAPK10P53779 464 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CDH13P55290 713 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 LINC00523Q86TU6 105 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 LDB1Q86U70 411 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 NT5DC4Q86YG4 428 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 PNPLA1Q8N8W4 532 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 SARS2Q9NP81 518 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 RBPJLQ9UBG7 517 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 STK39Q9UEW8 545 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ADAM28Q9UKQ2 775 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 HEATR9A2RTY3 570 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 YJEFN3A6XGL0 299 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 ADCY6O43306 1168 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CCNT2O60583 730 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 CRTAMO95727 393 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ZNF280DQ6N043 979 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ESRP1Q6NXG1 681 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 CIB1Q99828 191 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 FTHL17Q9BXU8 183 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 AP5M1Q9H0R1 490 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CRYL1Q9Y2S2 319 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 IGKV6-21A0A0C4DH24 114 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 MAGEB16A2A368 324 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CABYRO75952 493 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 B3GAT3O94766 335 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 RPS6KA3P51812 740 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 B3GNT6Q6ZMB0 384 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CYP4V2Q6ZWL3 525 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 EZH1Q92800 747 aaPredicted RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 DGCR14Q96DF8 476 aaKnown RBP12.04□□□□□ -0.48
MSH6-204ENST00000445503 DTNBP1Q96EV8 351 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 SORT1Q99523 831 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 DUSP16Q9BY84 665 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 ZNF112Q9UJU3 913 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 DSEQ9UL01 958 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 NOD1Q9Y239 953 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 WNK3Q9BYP7 1800 aa12.04□□□□□ -0.48
MSH6-204ENST00000445503 CITO14578 2027 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 TMEM114B3SHH9 223 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 PSMD12O00232 456 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 BDNFP23560 247 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TKTP29401 623 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 GRIK1P39086 918 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 MTX3Q5HYI7 312 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 ZFP1Q6P2D0 407 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TTC33Q6PID6 262 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 EPGNQ6UW88 154 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 LPCAT2Q7L5N7 544 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 LRRC52Q8N7C0 313 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 ACVR1CQ8NER5 493 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TUBGCP3Q96CW5 907 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 CDCA5Q96FF9 252 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 SENP8Q96LD8 212 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms