RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 COL5A1P20908 1838 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-208ENST00000437607 SLC12A8A0AV02 714 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 LRRD1A4D1F6 860 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 METTL12A8MUP2 240 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 MEI4A8MW99 385 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CES2O00748 559 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 NPC1O15118 1278 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 IGLV3-25P01717 112 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 TCF4P15884 667 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 AIF1P55008 147 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 COG7P83436 770 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CKAP4Q07065 602 aaKnown RBP12.47□□□□□ -0.41
PTPRF-208ENST00000437607 TUBB2AQ13885 445 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 KRT81Q14533 505 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 ZNF234Q14588 700 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 STARD3Q14849 445 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 BRMS1LQ5PSV4 323 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CCNI2Q6ZMN8 369 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-208ENST00000437607 ANKS1BQ7Z6G8 1248 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 GLRX5Q86SX6 157 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CACUL1Q86Y37 369 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 DENND1CQ8IV53 801 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CPXM2Q8N436 756 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CADM4Q8NFZ8 388 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 BAHD1Q8TBE0 780 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-208ENST00000437607 ALG3Q92685 438 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 NTAN1Q96AB6 310 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 SIPA1Q96FS4 1042 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 PBKQ96KB5 322 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 PEBP4Q96S96 227 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 TUBB2BQ9BVA1 445 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 ZDHHC5Q9C0B5 715 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 ELOVL2Q9NXB9 296 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 TOR4AQ9NXH8 423 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 SFMBT1Q9UHJ3 866 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 FNDC3AQ9Y2H6 1198 aaKnown RBP12.47□□□□□ -0.41
PTPRF-208ENST00000437607 GPSM3Q9Y4H4 160 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 PCDHB9Q9Y5E1 797 aa12.47□□□□□ -0.41
PTPRF-208ENST00000437607 CEP104O60308 925 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 ENDOD1O94919 500 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 C7P10643 843 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 SLC2A3P11169 496 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 IL1R2P27930 398 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 CCR1P32246 355 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 CXCR5P32302 372 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 TBX4P57082 545 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 TRIP4Q15650 581 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-208ENST00000437607 RAB6CQ53S08 254 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 BOLA3Q53S33 107 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 DBX2Q6ZNG2 339 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 BNIPLQ7Z465 357 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 PSTKQ8IV42 348 aaKnown RBP12.46□□□□□ -0.41
PTPRF-208ENST00000437607 ARFGAP1Q8N6T3 406 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 CCDC185Q8N715 623 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 EXD1Q8NHP7 514 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 CAPZA3Q96KX2 299 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 DCLK3Q9C098 648 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 RAB6CQ9H0N0 254 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 MIR1-1HGQ9H1L0 117 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 GAREM1Q9H706 876 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 EIF2B4Q9UI10 523 aaKnown RBP12.46□□□□□ -0.41
PTPRF-208ENST00000437607 TLR6Q9Y2C9 796 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 HBS1LQ9Y450 684 aaKnown RBP12.46□□□□□ -0.41
PTPRF-208ENST00000437607 MRFAP1Q9Y605 127 aa12.46□□□□□ -0.41
PTPRF-208ENST00000437607 PGRMC1O00264 195 aaKnown RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 BCAT2O15382 392 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 SRGAP2O75044 1071 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 DKK1O94907 266 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 ZRANB2O95218 330 aaKnown RBP eCLIP12.45□□□□□ -0.423e-7■■■■■ 46.6
PTPRF-208ENST00000437607 MOCS2O96007 188 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 EPHX1P07099 455 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF883P0CG24 379 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 RARAP10276 462 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 HLA-EP13747 358 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 PRLRP16471 622 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 HOXD9P28356 352 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 OXTRP30559 389 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 PAFAH1B1P43034 410 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 CXCR3P49682 368 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 CDH6P55285 790 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 MTA1Q13330 715 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 ZNF211Q13398 564 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 EIF4HQ15056 248 aaKnown RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 WHAMMP3Q1A5X7 153 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 HLA-BQ31612 363 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 KCNT1Q5JUK3 1230 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 ERMARDQ5T6L9 678 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 NUGGCQ68CJ6 796 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 TXNRD3NBQ6F5E7 133 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 C19orf48Q6RUI8 117 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 MAP7D3Q8IWC1 876 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 ATP6V0D2Q8N8Y2 350 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 KCTD6Q8NC69 237 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 UCMAQ8WVF2 138 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 PRCCQ92733 491 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 PLD4Q96BZ4 506 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 NAP1L3Q99457 506 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-208ENST00000437607 CALN1Q9BXU9 219 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 CIPCQ9C0C6 399 aa12.45□□□□□ -0.42
PTPRF-208ENST00000437607 DHX35Q9H5Z1 703 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms