RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 C22orf39Q6P5X5 142 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 PTPRN2Q92932 1015 aa29.89■■■□□ 2.37
USP42-202ENST00000404008 TARSL2A2RTX5 802 aaKnown RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 PPP1R12AO14974 1030 aaPredicted RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 SYNCRIPO60506 623 aaKnown RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 PAPSS2O95340 614 aaPredicted RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 CCNCP24863 283 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 PPIDQ08752 370 aaKnown RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 RFTN1Q14699 578 aaPredicted RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 C9orf64Q5T6V5 341 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 SLC13A5Q86YT5 568 aaPredicted RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 CCNYQ8ND76 341 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 LRRN4Q8WUT4 740 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 ISG20Q96AZ6 181 aaKnown RBP29.88■■■□□ 2.37
USP42-202ENST00000404008 LGMNQ99538 433 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 LRFN3Q9BTN0 628 aa29.88■■■□□ 2.37
USP42-202ENST00000404008 TCRBV7S2A1N4TA0A589 114 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 SIN3BO75182 1162 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 ZNF33AQ06730 810 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 TIGD7Q6NT04 549 aaPredicted RBP29.87■■■□□ 2.37
USP42-202ENST00000404008 Q6ZVU0 165 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 C1orf210Q8IVY1 113 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 PCDH20Q8N6Y1 951 aaKnown RBP29.87■■■□□ 2.37
USP42-202ENST00000404008 FATE1Q969F0 183 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 ERLEC1Q96DZ1 483 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 BRD8Q9H0E9 1235 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 PRSS16Q9NQE7 514 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 PRMT8Q9NR22 394 aaPredicted RBP29.87■■■□□ 2.37
USP42-202ENST00000404008 SNX12Q9UMY4 172 aa29.87■■■□□ 2.37
USP42-202ENST00000404008 WDFY4Q6ZS81 3184 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 OTUD4Q01804 1114 aaKnown RBP29.86■■■□□ 2.37
USP42-202ENST00000404008 NOMO1Q15155 1222 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 CYTH1Q15438 398 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 TMCO4Q5TGY1 634 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 ACTL9Q8TC94 416 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 PBKQ96KB5 322 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 OSBPL9Q96SU4 736 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 NAPGQ99747 312 aaPredicted RBP29.86■■■□□ 2.37
USP42-202ENST00000404008 TNKS2Q9H2K2 1166 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 POLMQ9NP87 494 aaPredicted RBP29.86■■■□□ 2.37
USP42-202ENST00000404008 ZNF318Q5VUA4 2279 aa29.86■■■□□ 2.37
USP42-202ENST00000404008 CACNA1IQ9P0X4 2223 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 FANCGO15287 622 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 LAMTOR5O43504 91 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 CEP104O60308 925 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 SLC10A7Q0GE19 358 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 LBRQ14739 615 aaKnown RBP29.85■■■□□ 2.37
USP42-202ENST00000404008 NYAP1Q6ZVC0 841 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 CCDC13Q8IYE1 715 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 MAML1Q92585 1016 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 HHIPQ96QV1 700 aa29.85■■■□□ 2.37
USP42-202ENST00000404008 TCRBV21S2A2A0A5A6 115 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 K7ESF4 209 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 MATN3O15232 486 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 COPAP53621 1224 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 ETF1P62495 437 aaKnown RBP29.84■■■□□ 2.37
USP42-202ENST00000404008 PRKD1Q15139 912 aaPredicted RBP29.84■■■□□ 2.37
USP42-202ENST00000404008 MAML2Q8IZL2 1156 aaPredicted RBP29.84■■■□□ 2.37
USP42-202ENST00000404008 TTC13Q8NBP0 860 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 TSTD1Q8NFU3 115 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 OR2A12Q8NGT7 310 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 NSMCE1Q8WV22 266 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 LHX3Q9UBR4 397 aa29.84■■■□□ 2.37
USP42-202ENST00000404008 CTAGE9A4FU28 777 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 AP1B1Q10567 949 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 XRCC4Q13426 336 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 HNRNPDQ14103 355 aaKnown RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 PAPD7Q5XG87 772 aaKnown RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 ZC3H18Q86VM9 953 aaKnown RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 PLPP6Q8IY26 295 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 CAMKK1Q8N5S9 505 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 TFB1MQ8WVM0 346 aaKnown RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 CINPQ9BW66 212 aaPredicted RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 FBRSQ9HAH7 460 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 SEPT3Q9UH03 358 aa29.83■■■□□ 2.37
USP42-202ENST00000404008 R3HDM2Q9Y2K5 976 aaKnown RBP29.83■■■□□ 2.37
USP42-202ENST00000404008 CES2O00748 559 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 GSRP00390 522 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 FGGP02679 453 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 NUBP1P53384 320 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 RHOAP61586 193 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 ELAVL3Q14576 367 aaKnown RBP29.82■■■□□ 2.36
USP42-202ENST00000404008 MARC1Q5VT66 337 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 B4GALNT4Q76KP1 1039 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 STK40Q8N2I9 435 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 RASGEF1CQ8N431 466 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 TEX26Q8N6G2 289 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 OR2T3Q8NH03 318 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 ZNF419Q96HQ0 510 aaPredicted RBP29.82■■■□□ 2.36
USP42-202ENST00000404008 CCDC114Q96M63 670 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 QKIQ96PU8 341 aaKnown RBP eCLIP29.82■■■□□ 2.36
USP42-202ENST00000404008 PSKH2Q96QS6 385 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 FAM118BQ9BPY3 351 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 TM6SF2Q9BZW4 377 aa29.82■■■□□ 2.36
USP42-202ENST00000404008 HACD1B0YJ81 288 aa29.81■■■□□ 2.36
USP42-202ENST00000404008 BNIP3LO60238 219 aa29.81■■■□□ 2.36
USP42-202ENST00000404008 APBB3O95704 486 aa29.81■■■□□ 2.36
USP42-202ENST00000404008 CCNB1P14635 433 aa29.81■■■□□ 2.36
USP42-202ENST00000404008 RENBPP51606 427 aa29.81■■■□□ 2.36
USP42-202ENST00000404008 CARD16Q5EG05 197 aa29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms