RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF423Q2M1K9 1284 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 XKR4Q5GH76 650 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 C1orf53Q5VUE5 145 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 MAVSQ7Z434 540 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 ZNF598Q86UK7 904 aaKnown RBP11.33□□□□□ -0.6
CUX1-204ENST00000393824 CTAGE3PQ8IX95 158 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 LILRA2Q8N149 483 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 NDUFAF2Q8N183 169 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 TMIGD2Q96BF3 282 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 SERPINI1Q99574 410 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 TRIM56Q9BRZ2 755 aaKnown RBP11.33□□□□□ -0.6
CUX1-204ENST00000393824 NUF2Q9BZD4 464 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 CHST12Q9NRB3 414 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 TBC1D23Q9NUY8 699 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 DPP3Q9NY33 737 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 PCDHGC3Q9UN70 934 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 PRSS51A0A1B0GVH4 220 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CXorf49A8MYA2 514 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 C9IYK1 514 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 LSM1O15116 133 aaKnown RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 SPTLC1O15269 473 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 HCRTO43612 131 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CST8O60676 142 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 POMCP01189 267 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ASPAP45381 313 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 SLC1A6P48664 564 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 OGDHQ02218 1023 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ORC1Q13415 861 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 KCNJ11Q14654 390 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ZNF829Q3KNS6 432 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 FASTKD1Q53R41 847 aaKnown RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 THOC7Q6I9Y2 204 aaKnown RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 TIFABQ6ZNK6 161 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ADGRF2Q8IZF7 708 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 DLG3Q92796 817 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 TOX2Q96NM4 488 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 TMEM106CQ9BVX2 250 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 SDCBP2Q9H190 292 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 PRDM5Q9NQX1 630 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 NXF1Q9UBU9 619 aaKnown RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 HMGXB4Q9UGU5 601 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CDH7Q9ULB5 785 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 COQ6Q9Y2Z9 468 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 RNF11Q9Y3C5 154 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 UNC80Q8N2C7 3258 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 APOC4-APOC2K7ER74 178 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CHADO15335 359 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 APOC2P02655 101 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 FGF3P11487 239 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 ZNF26P17031 533 aaPredicted RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 KDELR1P24390 212 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CA8P35219 290 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 GABRB2P47870 512 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CCR3P51677 355 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 BFSP2Q13515 415 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ACAP1Q15027 740 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 CLLU1OSQ5K130 101 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 DCDC5Q6ZRR9 648 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 C3orf58Q8NDZ4 430 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 PPP1R14CQ8TAE6 165 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 BORCS5Q969J3 196 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 ANKRD36BP1Q96IX9 119 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 PPP1R10Q96QC0 940 aaKnown RBP11.32□□□□□ -0.6
CUX1-204ENST00000393824 SHCBP1LQ9BZQ2 653 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 TMEM39AQ9NV64 488 aa11.32□□□□□ -0.6
CUX1-204ENST00000393824 A0A1B0GTW7 788 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 HMX2A2RU54 273 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 H3BNH8 94 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ADAM23O75077 832 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 LYPLA1O75608 230 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 BMP10O95393 424 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 RPLP2P05387 115 aaKnown RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 CLTBP09497 229 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 HMOX2P30519 316 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 SSTR3P32745 418 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 BCAP31P51572 246 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 MRPS22P82650 360 aaKnown RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 SLC25A11Q02978 314 aaKnown RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 PDK1Q15118 436 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 FSCBQ5H9T9 825 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 NECAB2Q7Z6G3 386 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 MRPL10Q7Z7H8 261 aaKnown RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 PHTF2Q8N3S3 785 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 TAB3Q8N5C8 712 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 TMEM102Q8N9M5 508 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 HM13Q8TCT9 377 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 HSPH1Q92598 858 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ACSF2Q96CM8 615 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 NEURL2Q9BR09 285 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 IMPG2Q9BZV3 1241 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 COPS7BQ9H9Q2 264 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 PLEKHA5Q9HAU0 1116 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 RGS18Q9NS28 235 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 SLC38A7Q9NVC3 462 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 SELENONQ9NZV5 590 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 NME7Q9Y5B8 376 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 CCDC162PA2VCL2 907 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ENPP3O14638 875 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms