RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 IGKV4-1P06312 121 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 SELLP14151 372 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ADRA1DP25100 572 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 SSTR2P30874 369 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 HOXC8P31273 242 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 PRKAR1BP31321 381 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 DGKEP52429 567 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 BCAT1P54687 386 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 EWSR1Q01844 656 aaKnown RBP eCLIP-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 KRT17Q04695 432 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ELAVL2Q12926 359 aaKnown RBP-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 CCNIQ14094 377 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZNF460Q14592 562 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 KRTAP19-6Q3LI70 58 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 TUBB8Q3ZCM7 444 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 CFAP100Q494V2 611 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 C2CD6Q53TS8 623 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 XKR3Q5GH77 459 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 CERCAMQ5T4B2 595 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 BROXQ5VW32 411 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZNF534Q76KX8 674 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 SLC25A41Q8N5S1 370 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 GJA10Q969M2 543 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 FAM104AQ969W3 186 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZDHHC12Q96GR4 267 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 VPS50Q96JG6 964 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 VN1R3Q9BXE9 311 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 LDHAL6BQ9BYZ2 381 aaPredicted RBP-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 QRSL1Q9H0R6 528 aaKnown RBP-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 PNRC2Q9NPJ4 139 aaKnown RBP-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 HCFC1R1Q9NWW0 138 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 ADAM22Q9P0K1 906 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 DKK4Q9UBT3 224 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 PYGO1Q9Y3Y4 419 aa-0.49□□□□□ -2.49
RNU6-540P-201ENST00000384622 TDRD6O60522 2096 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 NAV3Q8IVL0 2385 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 PALM2-AKAP2B1ALY0 433 aaPredicted RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 EXOC5O00471 708 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 PRYO14603 147 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 CA12O43570 354 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZFAND5O76080 213 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SGPL1O95470 568 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 MBPP02686 304 aaPredicted RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 TFRCP02786 760 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SLC3A2P08195 630 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 IGHV4-30-4P0DP06 118 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 ATF4P18848 351 aaPredicted RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 TNFSF8P32971 234 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 FUSP35637 526 aaKnown RBP eCLIP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SOX5P35711 763 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 TIRAPP58753 221 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 MEF2BQ02080 365 aaPredicted RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SF3A2Q15428 464 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 FASTKD1Q53R41 847 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 OLFML2AQ68BL7 652 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SATL1Q86VE3 508 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 RASSF3Q86WH2 238 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 HNRNPLLQ8WVV9 542 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 KAT2AQ92830 837 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 PPP2R3CQ969Q6 453 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 ACAP3Q96P50 834 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 GFM1Q96RP9 751 aaKnown RBP-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 TRIM2Q9C040 744 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 PANK3Q9H999 370 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 TRIM36Q9NQ86 728 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 MAN1C1Q9NR34 630 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZNF224Q9NZL3 707 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 CALCOCO1Q9P1Z2 691 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZNF180Q9UJW8 692 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 INTUQ9ULD6 942 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SLC4A4Q9Y6R1 1079 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 DISP3Q9P2K9 1392 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 FER1L4A9Z1Z3 1794 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SDK1Q7Z5N4 2213 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 CACNA1HO95180 2353 aa-0.5□□□□□ -2.49
RNU6-540P-201ENST00000384622 SETXQ7Z333 2677 aaKnown RBP-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 LRP1Q07954 4544 aaKnown RBP-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 A0A1W2PPR1 153 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 ZNF891A8MT65 544 aaPredicted RBP-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 SERPINE3A8MV23 424 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 A8MVJ9 347 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 PDZD2O15018 2839 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 DFNA5O60443 496 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 CLDN14O95500 239 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 TMIGD3P0DMS9 266 aaPredicted RBP-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 CEACAM1P13688 526 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 KLRC1P26715 233 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 PIK3R1P27986 724 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 EPHA3P29320 983 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 CPOXP36551 454 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 AVPR1AP37288 418 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 SLC6A12P48065 614 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 PPP3CCP48454 512 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 PIK3CGP48736 1102 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 TMPRSS3P57727 454 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 OCRLQ01968 901 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 DSG1Q02413 1049 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 OLIG2Q13516 323 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 TNFAIP1Q13829 316 aa-0.51□□□□□ -2.49
RNU6-540P-201ENST00000384622 MGAT5BQ3V5L5 792 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms