RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 ERAP2Q6P179 960 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 LCLAT1Q6UWP7 414 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ZBTB49Q6ZSB9 765 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 SNX32Q86XE0 403 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 FBXO39Q8N4B4 442 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 EBNA1BP2Q99848 306 aaKnown RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 TMEM109Q9BVC6 243 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 GOLGA2P5Q9HBQ8 144 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 SLIT2O94813 1529 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 KPNA4O00629 521 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 TNFAIP8O95379 198 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 EPB42P16452 691 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 HALP42357 657 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 USP41Q3LFD5 358 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PCID2Q5JVF3 399 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 TRIM63Q969Q1 353 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 B3GNT5Q9BYG0 378 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 COPG2Q9UBF2 871 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 CHD2O14647 1828 aaKnown RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 MAP3K13O43283 966 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 CCNB1P14635 433 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PAX7P23759 505 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PLK1P53350 603 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 JAG1P78504 1218 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 SLC25A3Q00325 362 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 XRCC4Q13426 336 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 NR6A1Q15406 480 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ANKS6Q68DC2 871 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 CCDC149Q6ZUS6 474 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 LPCAT2Q7L5N7 544 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 LRRC49Q8IUZ0 686 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PYDC1Q8WXC3 89 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PARVBQ9HBI1 364 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ZDHHC18Q9NUE0 388 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ATXN2Q99700 1313 aaKnown RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 A0A0G2JLL6 359 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 NR5A2O00482 541 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 DUSP11O75319 330 aaKnown RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 KRT36O76013 467 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PCDH8O95206 1070 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 CYP1A1P04798 512 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ELNP15502 786 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PPIDQ08752 370 aaKnown RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 TPGS1Q6ZTW0 290 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 PRRT2Q7Z6L0 340 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 FITM2Q8N6M3 262 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ZNF483Q8TF39 744 aaPredicted RBP15.22■□□□□ 0.03
NPHP4-201ENST00000378156 MAGED4Q96JG8 741 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 ZYG11BQ9C0D3 744 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 CDHR5Q9HBB8 845 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 SLC27A5Q9Y2P5 690 aa15.22■□□□□ 0.03
NPHP4-201ENST00000378156 GPR25O00155 361 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 TSHRP16473 764 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 NFKB1P19838 968 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 MSH3P20585 1137 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 PTDSS1P48651 473 aaKnown RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ECHDC2Q86YB7 292 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 C1orf127Q8N9H9 656 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 DIS3LQ8TF46 1054 aaKnown RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 CPT1BQ92523 772 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 MTERF3Q96E29 417 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 DYRK1BQ9Y463 629 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 KRT87PA6NCN2 255 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 KRT6AP02538 564 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 KRT6BP04259 564 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 KRT6CP48668 564 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 POLR2LP62875 67 aaKnown RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 NFYCQ13952 458 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 UNC5AQ6ZN44 842 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ZNF398Q8TD17 642 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 GDPD5Q8WTR4 605 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 GLMNQ92990 594 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 TMEM159Q96B96 161 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ACOX2Q99424 681 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 PCDH18Q9HCL0 1135 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ANKRD6Q9Y2G4 727 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 COQ4Q9Y3A0 265 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 PCDHA11Q9Y5I1 949 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 A8MUI8 341 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 CILPO75339 1184 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 PIGNO95427 931 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 CD48P09326 243 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 CCNG1P51959 295 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 RAD23AP54725 363 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 HPCAP84074 193 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 STARD3Q14849 445 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ALYREFQ86V81 257 aaKnown RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ZNF557Q8N988 423 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 NKD2Q969F2 451 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-201ENST00000378156 ABHD8Q96I13 439 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 OSGEPL1Q9H4B0 414 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 RMND5AQ9H871 391 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 SELENONQ9NZV5 590 aa15.21■□□□□ 0.03
NPHP4-201ENST00000378156 KLRG2A4D1S0 409 aaPredicted RBP15.21■□□□□ 0.02
NPHP4-201ENST00000378156 SNTNA6NMZ2 147 aa15.21■□□□□ 0.02
NPHP4-201ENST00000378156 TRIM24O15164 1050 aa15.21■□□□□ 0.02
NPHP4-201ENST00000378156 RGS5O15539 181 aa15.21■□□□□ 0.02
NPHP4-201ENST00000378156 GUCA1CO95843 209 aa15.21■□□□□ 0.02
NPHP4-201ENST00000378156 FNBP1LQ5T0N5 605 aa15.21■□□□□ 0.02
NPHP4-201ENST00000378156 ANKRD22Q5VYY1 191 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms