RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 TBC1D3FA6NER0 549 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 EIF3CLB5ME19 914 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TBC1D3LB9A6J9 549 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 KPNA3O00505 521 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 FGF10O15520 208 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 PLRG1O43660 514 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 CREB3O43889 395 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 RNF8O76064 485 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 SERPING1P05155 500 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TBC1D3HP0C7X1 549 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 ACVRL1P37023 503 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 CSNK1EP49674 416 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 METAP1P53582 386 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 RACK1P63244 317 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 CNTN1Q12860 1018 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 POLD3Q15054 466 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 POM121L1PQ3SYA9 428 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 N4BP2L1Q5TBK1 243 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 AGBL4Q5VU57 503 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TBC1D3GQ6DHY5 549 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TBC1D3CQ6IPX1 549 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 ZNF354CQ86Y25 554 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TBC1D3Q8IZP1 549 aaPredicted RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 PYROXD2Q8N2H3 581 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 SKA1Q96BD8 255 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 EIF3CQ99613 913 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TNKS2Q9H2K2 1166 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 GAREM1Q9H706 876 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 DONSONQ9NYP3 566 aa17.17■□□□□ 0.34
HMGN4-201ENST00000377575 LUC7L2Q9Y383 392 aaKnown RBP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.17■□□□□ 0.34
HMGN4-201ENST00000377575 TMEM191CA6NGB0 347 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ZSCAN5CA6NGD5 496 aaPredicted RBP17.16■□□□□ 0.34
HMGN4-201ENST00000377575 CBFA2T2O43439 604 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 GJB3O75712 270 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 CTSLP07711 333 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ZNF883P0CG24 379 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 NUDT1P36639 197 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 TPI1P60174 286 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ZNF252P-AS1Q0IIN9 211 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 HNRNPDQ14103 355 aaKnown RBP17.16■□□□□ 0.34
HMGN4-201ENST00000377575 HGSNATQ68CP4 663 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 PIP4P1Q86T03 277 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 DNAAF5Q86Y56 855 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 GRIN3AQ8TCU5 1115 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 CPLX3Q8WVH0 158 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ISG20Q96AZ6 181 aaKnown RBP17.16■□□□□ 0.34
HMGN4-201ENST00000377575 NCAPGQ9BPX3 1015 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ORAI3Q9BRQ5 295 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 MAGEB5Q9BZ81 275 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ISCUQ9H1K1 167 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 TSPY26PQ9H489 355 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 PREBQ9HCU5 417 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 AP4E1Q9UPM8 1137 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 ANKRD6Q9Y2G4 727 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 SLCO1B1Q9Y6L6 691 aa17.16■□□□□ 0.34
HMGN4-201ENST00000377575 WASH4PA8MWX3 477 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 C10orf142B7Z368 130 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 PLK4O00444 970 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 GIPC1O14908 333 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 PRPSAP2O60256 369 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 GYPCP04921 128 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 DNA2P51530 1060 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 C21orf59P57076 290 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 PPP2CBP62714 309 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 PPP2CAP67775 309 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 BNC1Q01954 994 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 HLA-BQ31612 363 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 SLC45A4Q5BKX6 768 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 CARD16Q5EG05 197 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 DPY19L3Q6ZPD9 716 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 TRIM69Q86WT6 500 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 CHST14Q8NCH0 376 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 SLC6A18Q96N87 628 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 XPO4Q9C0E2 1151 aaKnown RBP17.15■□□□□ 0.34
HMGN4-201ENST00000377575 AASDHPPTQ9NRN7 309 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 MYO1AQ9UBC5 1043 aa17.15■□□□□ 0.34
HMGN4-201ENST00000377575 FCF1Q9Y324 198 aaKnown RBP17.15■□□□□ 0.34
HMGN4-201ENST00000377575 PCNX2A6NKB5 2137 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 LATO43561 262 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 KDELR3O43731 214 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 ZNF821O75541 412 aaPredicted RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 LEFTY1O75610 366 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 CD59P13987 128 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 CCNHP51946 323 aaPredicted RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 YBEYP58557 167 aaPredicted RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 TRIM14Q14142 442 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 KIF19Q2TAC6 998 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 PARP15Q460N3 678 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 ARSIQ5FYB1 569 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 ERMARDQ5T6L9 678 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 PIP5KL1Q5T9C9 394 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 PRPF39Q86UA1 669 aaKnown RBP17.14■□□□□ 0.33
HMGN4-201ENST00000377575 NAXDQ8IW45 347 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 PLPP6Q8IY26 295 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 CASKIN2Q8WXE0 1202 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 SERAC1Q96JX3 654 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 HEPHQ9BQS7 1158 aa17.14■□□□□ 0.33
HMGN4-201ENST00000377575 SNRNP25Q9BV90 132 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms