RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 A0A1W2PP55 124 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 ARHGAP42A6NI28 874 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 PLK4O00444 970 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 MCF2LO15068 1137 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 SPOPO43791 374 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 TMCC1O94876 653 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 RETP07949 1114 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 C7P10643 843 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 ACSL1P33121 698 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 VAV2P52735 878 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 HADHBP55084 474 aaKnown RBP13.62□□□□□ -0.23
VPS28-202ENST00000377348 ZBTB16Q05516 673 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 TTC31Q49AM3 519 aaPredicted RBP13.62□□□□□ -0.23
VPS28-202ENST00000377348 TMCO3Q6UWJ1 677 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 DPY19L3Q6ZPD9 716 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 LPCAT2Q7L5N7 544 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 KIAA1328Q86T90 577 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 SLC41A1Q8IVJ1 513 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 AADATQ8N5Z0 425 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 RUBCNQ92622 972 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 GPR174Q9BXC1 333 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 CEP44Q9C0F1 390 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 SMOC1Q9H4F8 434 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 FBXL12Q9NXK8 326 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 DONSONQ9NYP3 566 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 TRIM10Q9UDY6 481 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 ALG6Q9Y672 507 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 ATXN2Q99700 1313 aaKnown RBP13.62□□□□□ -0.23
VPS28-202ENST00000377348 GON4LQ3T8J9 2241 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 NUMA1Q14980 2115 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 NYNRINQ9P2P1 1898 aaKnown RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 NUP205Q92621 2012 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PLXND1Q9Y4D7 1925 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 LRRD1A4D1F6 860 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PJA2O43164 708 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PRAMEF11O60813 436 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 NDUFS2O75306 463 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 RNASEH2AO75792 299 aaKnown RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 EPN2O95208 641 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 MAP3K6O95382 1288 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 IGLV3-19P01714 112 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 KRT1P04264 644 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 KDELR1P24390 212 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 OXTRP30559 389 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 GKP32189 559 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 CHRNA3P32297 505 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 SLC1A1P43005 524 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 NAP1L1P55209 391 aaKnown RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 GEMIN4P57678 1058 aaKnown RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 CREB5Q02930 508 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 SPEM2Q0P670 501 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PDK2Q15119 407 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 ANKRD20A8PQ5CZ79 823 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 CARD16Q5EG05 197 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 ATXN7L2Q5T6C5 722 aaPredicted RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 SLC36A4Q6YBV0 504 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 RYBPQ8N488 228 aaPredicted RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 HDDC3Q8N4P3 179 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PCDH20Q8N6Y1 951 aaKnown RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 OR6K2Q8NGY2 324 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 TPCN2Q8NHX9 752 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PCDH19Q8TAB3 1148 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PIP4K2CQ8TBX8 421 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 GRIN3AQ8TCU5 1115 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 ZNF670Q9BS34 389 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 NEUROG2Q9H2A3 272 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PDFQ9HBH1 243 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 PARD6AQ9NPB6 346 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 RCOR3Q9P2K3 495 aaPredicted RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 UBA2Q9UBT2 640 aaPredicted RBP13.61□□□□□ -0.23
VPS28-202ENST00000377348 PPM1HQ9ULR3 514 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 THADAQ6YHU6 1953 aa13.61□□□□□ -0.23
VPS28-202ENST00000377348 LAMA1P25391 3075 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 ZSCAN5CA6NGD5 496 aaPredicted RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 C3orf70A6NLC5 250 aaPredicted RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 ALOX15BO15296 676 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 MFSD11O43934 449 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 ADH1BP00325 375 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 C5AR1P21730 350 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 ITPKAP23677 461 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 HOXD11P31277 338 aaPredicted RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 DRD3P35462 400 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 RECQLP46063 649 aaPredicted RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 MARCKSL1P49006 195 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 CCNHP51946 323 aaPredicted RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 CYTH1Q15438 398 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 ARSIQ5FYB1 569 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 LYSMD4Q5XG99 296 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 NCBP2-AS2Q69YL0 99 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 C11orf63Q6NUN7 778 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 DSG4Q86SJ6 1040 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 DAAM2Q86T65 1068 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 MAP7D3Q8IWC1 876 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 RHOT1Q8IXI2 618 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 LZTR1Q8N653 840 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 PQLC3Q8N755 202 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 ISG20Q96AZ6 181 aaKnown RBP13.6□□□□□ -0.23
VPS28-202ENST00000377348 FAF2Q96CS3 445 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 LOXL4Q96JB6 756 aa13.6□□□□□ -0.23
VPS28-202ENST00000377348 EXOC2Q96KP1 924 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms