RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SPOCK2Q92563 424 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 MRPS31Q92665 395 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 PLD4Q96BZ4 506 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 RTP4Q96DX8 246 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 HAO1Q9UJM8 370 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 VANGL2Q9ULK5 521 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 A8MUI8 341 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 TRAFD1O14545 582 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 MT-ND3P03897 115 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 TARSP26639 723 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 GABRR2P28476 465 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 CCR2P41597 374 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 BBS9Q3SYG4 887 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 STXBP5Q5T5C0 1151 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 HTR3CQ8WXA8 447 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 ZFRQ96KR1 1074 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 KLC2Q9H0B6 622 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 PRDM12Q9H4Q4 367 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 TRPC7Q9HCX4 862 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 NDFIP2Q9NV92 336 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 DPP7Q9UHL4 492 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 ZFP69BQ9UJL9 534 aa13.42□□□□□ -0.26
SQSTM1-201ENST00000360718 NYNRINQ9P2P1 1898 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 RFXAPO00287 272 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MTSS1O43312 755 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 KLKB1P03952 638 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 NAA25Q14CX7 972 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 WASHC2DQ5SRD0 308 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ANKRD22Q5VYY1 191 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 PPP2R2DQ66LE6 453 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 RAP1GAP2Q684P5 730 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ELMSAN1Q6PJG2 1045 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 NLRP9Q7RTR0 991 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 CHSY1Q86X52 802 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 BANPQ8N9N5 519 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 TCP10LQ8TDR4 215 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 LGMNQ99538 433 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 CORO1BQ9BR76 489 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 TRIM55Q9BYV6 548 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 FRMD8Q9BZ67 464 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ZYG11BQ9C0D3 744 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MANSC1Q9H8J5 431 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ASAH2Q9NR71 780 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MPP6Q9NZW5 540 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 PPARGC1AQ9UBK2 798 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 BANF1O75531 89 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MBL2P11226 248 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 PTPN4P29074 926 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 CDC25CP30307 473 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 BASP1P80723 227 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 PRKD1Q15139 912 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ZNF697Q5TEC3 545 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ARL14EPQ8N8R7 260 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 RTL3Q8N8U3 475 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 ADAMTS19Q8TE59 1207 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 DCAKDQ8WVC6 231 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 IGSF8Q969P0 613 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MIEF2Q96C03 454 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 KLF16Q9BXK1 252 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 SMPD4Q9NXE4 827 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 MSRAQ9UJ68 235 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 HCFC2Q9Y5Z7 792 aa13.41□□□□□ -0.26
SQSTM1-201ENST00000360718 A0A1W2PRU2 124 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 F5H5T6 163 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 SCAMP3O14828 347 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 ACSL4O60488 711 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 GCATO75600 419 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 STC2O76061 302 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 LMNAP02545 664 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 VAV1P15498 845 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 RHOQP17081 205 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 HDCP19113 662 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 ADRA1DP25100 572 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 GALNT2Q10471 571 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 MSS51Q4VC12 460 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 TAF1BQ53T94 588 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 LONP2Q86WA8 852 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 TAB3Q8N5C8 712 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 UTP4Q969X6 686 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 AZIN2Q96A70 460 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 HDAC11Q96DB2 347 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 TCEAL4Q96EI5 215 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 RPRD1AQ96P16 312 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 DDX50Q9BQ39 737 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 TBC1D10AQ9BXI6 508 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 NPHS2Q9NP85 383 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 SEPT10Q9P0V9 454 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 LNPEPQ9UIQ6 1025 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 SUFUQ9UMX1 484 aa13.4□□□□□ -0.26
SQSTM1-201ENST00000360718 WASH4PA8MWX3 477 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CNTN5O94779 1100 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 LUC7L3O95232 432 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 TGDSO95455 350 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 FGF19O95750 216 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 OLFM2O95897 454 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 INHBAP08476 426 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 IRF1P10914 325 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms