RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 AMACRQ9UHK6 382 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TTC7AQ9ULT0 858 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 RIF1Q5UIP0 2472 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 TCRBV7S3A2A0A539 114 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TYW5A2RUC4 315 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 ZNF487B1APH4 448 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 GRIA1P42261 906 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 MAPKAPK2P49137 400 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 NDST2P52849 883 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 STARD6P59095 220 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 EIF3EP60228 445 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 COPS2P61201 443 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ECT2LQ008S8 904 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PPIDQ08752 370 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 DLG2Q15700 870 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 C6orf118Q5T5N4 469 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 FAXCQ5TGI0 409 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ZNF567Q8N184 647 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TXNDC5Q8NBS9 432 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 SPDYE1Q8NFV5 336 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 OR2A12Q8NGT7 310 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 EDAQ92838 391 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CALR3Q96L12 384 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 PWWP2AQ96N64 755 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 FAM129BQ96TA1 746 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 MAGEH1Q9H213 219 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 LMAN1LQ9HAT1 526 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 WNT16Q9UBV4 365 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ERVW-1Q9UQF0 538 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 MUC22E2RYF6 1773 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 KRIT1O00522 736 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TJP3O95049 919 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 HLA-DQB2P05538 268 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PDHA1P08559 390 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 DLDP09622 509 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 CCNB1P14635 433 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PTPN3P26045 913 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CETN2P41208 172 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 GRIA2P42262 883 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PTGIRP43119 386 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CLCN6P51797 869 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 SLC7A5Q01650 507 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 UBXN2BQ14CS0 331 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 LRRC73Q5JTD7 316 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 C9orf64Q5T6V5 341 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TSSK4Q6SA08 328 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 DPY19L3Q6ZPD9 716 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TRIM67Q6ZTA4 783 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PRPF39Q86UA1 669 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 RALGPS2Q86X27 583 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 VSIG1Q86XK7 387 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 KLHL7Q8IXQ5 586 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 SH2D3CQ8N5H7 860 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PNPLA1Q8N8W4 532 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 RPLP0P6Q8NHW5 317 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ARRDC2Q8TBH0 407 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 OXNAD1Q96HP4 312 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 PBKQ96KB5 322 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 NCAPGQ9BPX3 1015 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CAAP1Q9H8G2 361 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TBC1D17Q9HA65 648 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 SEPT10Q9P0V9 454 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 LHX3Q9UBR4 397 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 SERGEFQ9UGK8 458 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 LCMT1Q9UIC8 334 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CDC23Q9UJX2 597 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 EFR3BQ9Y2G0 817 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 STARD13Q9Y3M8 1113 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ZNF318Q5VUA4 2279 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 KANSL1LA0AUZ9 987 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 MATN3O15232 486 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 KCNN4O15554 427 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TMCC1O94876 653 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PRKCGP05129 697 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TCP1P17987 556 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 CR2P20023 1033 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 IVDP26440 423 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 VPS41P49754 854 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 YBEYP58557 167 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 DSC2Q02487 901 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 DMWDQ09019 674 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 MTAPQ13126 283 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ENPP2Q13822 863 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 BYSLQ13895 437 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 GRAMD4Q6IC98 578 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 KDM7AQ6ZMT4 941 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 CCDC105Q8IYK2 499 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ZNF513Q8N8E2 541 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 KIAA1958Q8N8K9 716 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 ATP11CQ8NB49 1132 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 MAML1Q92585 1016 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 DNASE1L2Q92874 299 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 HDAC11Q96DB2 347 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 TSGA13Q96PP4 275 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 XPO6Q96QU8 1125 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 IL12RB2Q99665 862 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 DDX50Q9BQ39 737 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 CARD6Q9BX69 1037 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 NOD2Q9HC29 1040 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms