RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OR7D4Q8NG98 312 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 SPPL3Q8TCT6 385 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 MICAL1Q8TDZ2 1067 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 SLC22A17Q8WUG5 538 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 LBHD1Q9BQE6 289 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 CORO1BQ9BR76 489 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 LRRC3Q9BY71 257 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 IL22Q9GZX6 179 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 FAM107BQ9H098 131 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 SLC25A51Q9H1U9 297 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 ATXN3LQ9H3M9 355 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF180Q9UJW8 692 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 RWDD3Q9Y3V2 267 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 A0A1W2PRU2 124 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 SRRM3A6NNA2 597 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GOLGA8RI6L899 631 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 PRAMEF11O60813 436 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 RHOCP08134 193 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MYL4P12829 197 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MYOGP15173 224 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GJA1P17302 382 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ZXDBP98169 803 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 LBRQ14739 615 aaKnown RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 PCSK7Q16549 785 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 PPM1LQ5SGD2 360 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 TTC39BQ5VTQ0 682 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CYS1Q717R9 158 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 KDELC2Q7Z4H8 507 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GDAP1Q8TB36 358 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ADAMTS19Q8TE59 1207 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CDKL2Q92772 493 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 TTC17Q96AE7 1141 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GCNAQ96QF7 691 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 KLF6Q99612 283 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MAGEH1Q9H213 219 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 RETREG1Q9H6L5 497 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 IL1RAPL1Q9NZN1 696 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 SLC17A6Q9P2U8 582 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 SMG5Q9UPR3 1016 aaKnown RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GBF1Q92538 1859 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 GMNCA6NCL1 334 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 NDUFAB1O14561 156 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 PRPF4O43172 522 aaKnown RBP eCLIP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ARHGEF15O94989 841 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MT-ND3P03897 115 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CA4P22748 312 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 HOXD9P28356 352 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CD86P42081 329 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CLCN4P51793 760 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 DSC2Q02487 901 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 NIPAL4Q0D2K0 466 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF177Q13360 481 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MPP3Q13368 585 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ZSCAN26Q16670 478 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 TMCO4Q5TGY1 634 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CHST9Q7L1S5 443 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 RASSF3Q86WH2 238 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 TEX26Q8N6G2 289 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 IMP4Q96G21 291 aaKnown RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 CERS2Q96G23 380 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 MRGPRX2Q96LB1 330 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 FCRL3Q96P31 734 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-202ENST00000339872 SPON2Q9BUD6 331 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 ASAH2Q9NR71 780 aa13.61□□□□□ -0.23
HMGB1-202ENST00000339872 TRIM49D1C9J1S8 452 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 LPXNO60711 386 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 KRT37O76014 449 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 USP1O94782 785 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 LATS1O95835 1130 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 CDC25CP30307 473 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 ADRA1AP35348 466 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF235Q14590 738 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 GLIPR1L2Q4G1C9 344 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 STXBP5Q5T5C0 1151 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 MARK2Q7KZI7 788 aaKnown RBP13.6□□□□□ -0.23
HMGB1-202ENST00000339872 TMEM135Q86UB9 458 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 PGBD5Q8N414 524 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.6□□□□□ -0.23
HMGB1-202ENST00000339872 PDFQ9HBH1 243 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 CHRAC1Q9NRG0 131 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 HCFC1R1Q9NWW0 138 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 STOML2Q9UJZ1 356 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 SOX13Q9UN79 622 aa13.6□□□□□ -0.23
HMGB1-202ENST00000339872 HELZP42694 1942 aaKnown RBP13.6□□□□□ -0.23
HMGB1-202ENST00000339872 FAM237BA0A1B0GVD1 139 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 TTC24A2A3L6 582 aaPredicted RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 NRG2O14511 850 aaPredicted RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 TYROBPO43914 113 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 SNRPAP09012 282 aaKnown RBP13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ERVK-10P10266 1014 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 WNT3AP56704 352 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 BMPR2Q13873 1038 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 ANKRD20A4Q4UJ75 823 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 LGSNQ5TDP6 509 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 DENND5AQ6IQ26 1287 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 KDELC1Q6UW63 502 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 MFSD3Q96ES6 412 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 SGSM3Q96HU1 749 aa13.59□□□□□ -0.23
HMGB1-202ENST00000339872 SERAC1Q96JX3 654 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms