RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZNF564Q8TBZ8 553 aaPredicted RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 NETO1Q8TDF5 533 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 FAM131CQ96AQ9 280 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 EIF3CQ99613 913 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 OMDQ99983 421 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 NCAPGQ9BPX3 1015 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 PCED1AQ9H1Q7 454 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 CAPN10Q9HC96 672 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 SPTLC3Q9NUV7 552 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 IP6K2Q9UHH9 426 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 FZD4Q9ULV1 537 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 FCF1Q9Y324 198 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 SLCO1B1Q9Y6L6 691 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 ANKRD36A6QL64 1941 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 MEI4A8MW99 385 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 EEF2KO00418 725 aaKnown RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 KDELR3O43731 214 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 AKR1B10O60218 316 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 H2AFZP0C0S5 128 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 ZNF75DP51815 510 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 LIMK1P53667 647 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 YBEYP58557 167 aaPredicted RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 SLC25A11Q02978 314 aaKnown RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 SMTNL2Q2TAL5 461 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 PPP6R3Q5H9R7 873 aaPredicted RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 WDR45BQ5MNZ6 344 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 LEKR1Q6ZMV7 388 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 H2AFVQ71UI9 128 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 CPNE8Q86YQ8 564 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 GANCQ8TET4 914 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 BIRC7Q96CA5 298 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 HMCESQ96FZ2 354 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 EDEM2Q9BV94 578 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 CEP44Q9C0F1 390 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 LRRC19Q9H756 370 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 FSCN3Q9NQT6 498 aa16.14■□□□□ 0.17
CLN3-201ENST00000333496 CWC15Q9P013 229 aaKnown RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 EIF2B4Q9UI10 523 aaKnown RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 CDV3Q9UKY7 258 aaKnown RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.14■□□□□ 0.17
CLN3-201ENST00000333496 RASA4BC9J798 803 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 MYO1FO00160 1098 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 CDX4O14627 284 aaPredicted RBP16.13■□□□□ 0.17
CLN3-201ENST00000333496 RASA4O43374 803 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 SERPINF2P08697 491 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 RARAP10276 462 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 CHRNA3P32297 505 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 SERINC3Q13530 473 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 DPYSL2Q16555 572 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 POM121L1PQ3SYA9 428 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 DPY19L3Q6ZPD9 716 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 RFX8Q6ZV50 586 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 DSG4Q86SJ6 1040 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 PCDH20Q8N6Y1 951 aaKnown RBP16.13■□□□□ 0.17
CLN3-201ENST00000333496 CEP76Q8TAP6 659 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 CTNNBL1Q8WYA6 563 aaPredicted RBP16.13■□□□□ 0.17
CLN3-201ENST00000333496 VOPP1Q96AW1 172 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 MRFAP1L1Q96HT8 127 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 CCDC42Q96M95 316 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 NUSAP1Q9BXS6 441 aaKnown RBP16.13■□□□□ 0.17
CLN3-201ENST00000333496 ZWILCHQ9H900 591 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 OSGEPQ9NPF4 335 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 HPCAL4Q9UM19 191 aa16.13■□□□□ 0.17
CLN3-201ENST00000333496 FAM47DPA6NHR8 397 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 SLC30A4O14863 429 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 CFIP05156 583 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 IGHV4-34P06331 123 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 TMEM253P0C7T8 217 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ERCC2P18074 760 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 TERF1P54274 439 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ADPRHP54922 357 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 SFSWAPQ12872 951 aaKnown RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 DPYSQ14117 519 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 PUM1Q14671 1186 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-201ENST00000333496 PARP15Q460N3 678 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 BOLA3Q53S33 107 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 STPG1Q5TH74 334 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 FAM46CQ5VWP2 391 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 NCEH1Q6PIU2 408 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 ISG20Q96AZ6 181 aaKnown RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 CCDC114Q96M63 670 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ORAI3Q9BRQ5 295 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 CTTNBP2NLQ9P2B4 639 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 UVRAGQ9P2Y5 699 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 SLC6A14Q9UN76 642 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 FARP1Q9Y4F1 1045 aaPredicted RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 WASF2Q9Y6W5 498 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 C1QTNF3-AMACRE9PGA6 284 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 TM4SF5O14894 197 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ENGP17813 658 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 HCAR3P49019 387 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 CNTN1Q12860 1018 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 CARD16Q5EG05 197 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ARSIQ5FYB1 569 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 AGBL4Q5VU57 503 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 POLNQ7Z5Q5 900 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ARHGAP12Q8IWW6 846 aa16.12■□□□□ 0.17
CLN3-201ENST00000333496 ZCCHC9Q8N567 271 aaKnown RBP16.12■□□□□ 0.17
CLN3-201ENST00000333496 NPWQ8N729 165 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms