RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TBC1D3IA0A087WXS9 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3EA0A087X179 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3KA0A087X1G2 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 SPAARA0A1B0GVQ0 90 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 A0A1W2PQJ5 194 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3FA6NER0 549 aaPredicted RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3LB9A6J9 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 KPNA3O00505 521 aaPredicted RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 WNT9AO14904 365 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 SLC7A4O43246 635 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 PLRG1O43660 514 aaKnown RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 RAMP2O60895 175 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 CER1O95813 267 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 CD160O95971 181 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 GYPCP04921 128 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3HP0C7X1 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 GZMAP12544 262 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 CEACAM1P13688 526 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 PMLP29590 882 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 ETFBP38117 255 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 CCR5P51681 352 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 FAM193AP78312 1265 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TEAD4Q15561 434 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 SKOR2Q2VWA4 1001 aaPredicted RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 HLA-BQ31612 363 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 KCNT1Q5JUK3 1230 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3GQ6DHY5 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3CQ6IPX1 549 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TBC1D3Q8IZP1 549 aaPredicted RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 ARFGAP1Q8N6T3 406 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 RTL3Q8N8U3 475 aaKnown RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 CAMK1GQ96NX5 476 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 TM6SF2Q9BZW4 377 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 NOL6Q9H6R4 1146 aaKnown RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 MYO1AQ9UBC5 1043 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 ANKRD6Q9Y2G4 727 aa16.64■□□□□ 0.25
LSM1-201ENST00000311351 FARP1Q9Y4F1 1045 aaPredicted RBP16.64■□□□□ 0.25
LSM1-201ENST00000311351 TMEM191CA6NGB0 347 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 UPK3BL1B0FP48 263 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 UPK3BL2E5RIL1 263 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 KCNK3O14649 394 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 SH3BP5O60239 455 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 WNT1P04628 370 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 DESP17661 470 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 MAT2AP31153 395 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 RECQLP46063 649 aaPredicted RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 DNA2P51530 1060 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 TAS2R38P59533 333 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 CA9Q16790 459 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 PIP5KL1Q5T9C9 394 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 ADAT2Q7Z6V5 191 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 PCDH20Q8N6Y1 951 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 OR6K2Q8NGY2 324 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 EPAS1Q99814 870 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 SNRNP25Q9BV90 132 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 XPO4Q9C0E2 1151 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 CEP44Q9C0F1 390 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 KLC2Q9H0B6 622 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 MAGEH1Q9H213 219 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 SLC32A1Q9H598 525 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 AASDHPPTQ9NRN7 309 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 IL36AQ9UHA7 158 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 PCSK1NQ9UHG2 260 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 AP4E1Q9UPM8 1137 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 WASF2Q9Y6W5 498 aa16.63■□□□□ 0.25
LSM1-201ENST00000311351 MAP1BP46821 2468 aaKnown RBP16.63■□□□□ 0.25
LSM1-201ENST00000311351 LATO43561 262 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 LEFTY1O75610 366 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 PRNPP04156 253 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 CCNHP51946 323 aaPredicted RBP16.62■□□□□ 0.25
LSM1-201ENST00000311351 AIF1P55008 147 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 RACK1P63244 317 aaKnown RBP16.62■□□□□ 0.25
LSM1-201ENST00000311351 ZBED6P86452 979 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 SLC20A2Q08357 652 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 FOXC1Q12948 553 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 POLD3Q15054 466 aaPredicted RBP16.62■□□□□ 0.25
LSM1-201ENST00000311351 ARSIQ5FYB1 569 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 IL27RAQ6UWB1 636 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 CYP4V2Q6ZWL3 525 aaPredicted RBP16.62■□□□□ 0.25
LSM1-201ENST00000311351 ZNF354CQ86Y25 554 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 NAXDQ8IW45 347 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 NETO2Q8NC67 525 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 TMIEQ8NEW7 156 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 HMCESQ96FZ2 354 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.62■□□□□ 0.25
LSM1-201ENST00000311351 ISCUQ9H1K1 167 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 DHX35Q9H5Z1 703 aaKnown RBP16.62■□□□□ 0.25
LSM1-201ENST00000311351 RETREG1Q9H6L5 497 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 ZDHHC6Q9H6R6 413 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 TM7SF3Q9NS93 570 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 CAPN11Q9UMQ6 739 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 SCINQ9Y6U3 715 aa16.62■□□□□ 0.25
LSM1-201ENST00000311351 H0Y8X5 98 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 GKP32189 559 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 CTSKP43235 329 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 TPI1P60174 286 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 SIM1P81133 766 aaPredicted RBP16.61■□□□□ 0.25
LSM1-201ENST00000311351 SLC14A1Q13336 389 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 CARD16Q5EG05 197 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 FNIP1Q8TF40 1166 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms