RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CERKQ8TCT0 537 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 FNDC11Q9BVV2 318 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ERGIC3Q9Y282 383 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ULK1O75385 1050 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 UGT2B15P54855 530 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 LSM3P62310 102 aaKnown RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 TESCQ96BS2 214 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 VPS4AQ9UN37 437 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ZNF484Q5JVG2 852 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 RAB11FIP2Q7L804 512 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PTCD2Q8WV60 388 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SEMA4BQ9NPR2 832 aaPredicted RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TFR2Q9UP52 801 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GNRH1P01148 92 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 HNRNPH1P31943 449 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GMPSP49915 693 aaPredicted RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 MAPK7Q13164 816 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 KLHDC7AQ5VTJ3 777 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 RETSATQ6NUM9 610 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SLC47A2Q86VL8 602 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 OR7A2PQ8NGA2 310 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 ZFP28Q8NHY6 868 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FAM81AQ8TBF8 368 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 RUSC1Q9BVN2 902 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PDGFDQ9GZP0 370 aaPredicted RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GNPTGQ9UJJ9 305 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TTC34A8MYJ7 566 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SLC26A4O43511 780 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GJA1P17302 382 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FMR1Q06787 632 aaKnown RBP eCLIP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 EML3Q32P44 896 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 BHLHB9Q6PI77 547 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GALNT7Q86SF2 657 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 MEIOBQ8N635 442 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 BHLHE22Q8NFJ8 381 aaPredicted RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SMARCD1Q96GM5 515 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 ZSWIM1Q9BR11 485 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PLEKHA1Q9HB21 404 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 KANSL3Q9P2N6 904 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PFKFB4Q16877 469 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 ZNF613Q6PF04 617 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PAGE2Q7Z2X7 111 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FAM124AQ86V42 546 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 MYDGFQ969H8 173 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TMEM216Q9P0N5 145 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 VIL1P09327 827 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 MGAT1P26572 445 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TUBB3Q13509 450 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TRMT5Q32P41 509 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 DGLUCYQ7Z3D6 616 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 CD302Q8IX05 232 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 ANKRD13AQ8IZ07 590 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 A0A087X1B8 175 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PLIN3O60664 434 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FKBP6O75344 327 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 INTS11Q5TA45 600 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GCNT7Q6ZNI0 430 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PSMA8Q8TAA3 256 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SELENOMQ8WWX9 145 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 RNF31Q96EP0 1072 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TMEM5Q9Y2B1 443 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 GMEB1Q9Y692 573 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FAUP35544 74 aaKnown RBP11.51□□□□□ -0.57
PTPN4-201ENST00000263708 USP46P62068 366 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 MC1RQ01726 317 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 ABRQ12979 859 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 FAM91A1Q658Y4 838 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 EMC1Q8N766 993 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 NEDD1Q8NHV4 660 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 OSMRQ99650 979 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 PHF24Q9UPV7 400 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 XKRYO14609 159 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SLC28A2O43868 658 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 DNASE1L1P49184 302 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 VPS72Q15906 364 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 SPANXN3Q5MJ09 141 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 METTL21CQ5VZV1 264 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 TMEM176AQ96HP8 235 aa11.51□□□□□ -0.57
PTPN4-201ENST00000263708 A0A1B0GTH6 734 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 OR10H3O60404 316 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 PRH1P02810 166 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 NOS2P35228 1153 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 FRG1Q14331 258 aaKnown RBP11.5□□□□□ -0.57
PTPN4-201ENST00000263708 RASAL3Q86YV0 1011 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 DHRSXQ8N5I4 330 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 BTBD7Q9P203 1132 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 TMEM2Q9UHN6 1383 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 IL1BP01584 269 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 SERPINA4P29622 427 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 MNDAP41218 407 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 PIK3CGP48736 1102 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 MGAT5Q09328 741 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 NR1I3Q14994 352 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 OR4A15Q8NGL6 344 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 KAT5Q92993 513 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 ZKSCAN4Q969J2 545 aaPredicted RBP11.5□□□□□ -0.57
PTPN4-201ENST00000263708 MASP1P48740 699 aa11.5□□□□□ -0.57
PTPN4-201ENST00000263708 SAMD4BQ5PRF9 694 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms