RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LGR4Q9BXB1 951 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 OSBPL11Q9BXB4 747 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NDUFAF4Q9P032 175 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 STOML1Q9UBI4 398 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF230Q9UIE0 474 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 STXBP5LQ9Y2K9 1186 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGAP32A7KAX9 2087 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 A0A0A6YYH2 397 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 A6NJ64 397 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HSBP1L1C9JCN9 74 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CDK2AP1O14519 115 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 VILLO15195 856 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SCTRP47872 440 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 MYBPC1Q00872 1141 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FAM83AQ86UY5 434 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC36Q8IYA8 594 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PTCD2Q8WV60 388 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ACOT11Q8WXI4 607 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CHAMP1Q96JM3 812 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NCOA5Q9HCD5 579 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 POLR3HQ9Y535 204 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FLT1P17948 1338 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GATCO43716 136 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 MED24O75448 989 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ALDH1A2O94788 518 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SPDEFO95238 335 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LY86O95711 162 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 EIF2DP41214 584 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 IRAK1P51617 712 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 HNRNPMP52272 730 aaKnown RBP eCLIP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LMAN2Q12907 356 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ADAM9Q13443 819 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LDLRAD1Q5T700 205 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TTC33Q6PID6 262 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 APOA5Q6Q788 366 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DEGS2Q6QHC5 323 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KCNT2Q6UVM3 1135 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC51BQ86UW2 128 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DNAJC10Q8IXB1 793 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC35B4Q969S0 331 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC22A18Q96BI1 424 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC25A18Q9H1K4 315 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NCDNQ9UBB6 729 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC39A10Q9ULF5 831 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHGC3Q9UN70 934 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SRPRBQ9Y5M8 271 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 A0A088AWK7 358 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 A0A0B4J269 797 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KPNA4O00629 521 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TERTO14746 1132 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PRPF4O43172 522 aaKnown RBP eCLIP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF10P21506 573 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A4P22310 534 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DNASE1P24855 282 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A3P35503 534 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A5P35504 534 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 POLR2GP62487 172 aaKnown RBP eCLIP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 VSNL1P62760 191 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PURAQ00577 322 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 MC1RQ01726 317 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PFKPQ01813 784 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CDK18Q07002 472 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PPARAQ07869 468 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ARL6IP1Q15041 203 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 BATFQ16520 125 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TIGD2Q4W5G0 525 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RTKN2Q8IZC4 609 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DMRTB1Q96MA1 342 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 BEX1Q9HBH7 125 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLAMF7Q9NQ25 335 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 THG1LQ9NWX6 298 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NBASA2RRP1 2371 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RNF13O43567 381 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RPS2P15880 293 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF813Q6ZN06 617 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GK5Q6ZS86 529 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CDAN1Q8IWY9 1227 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 IGSF22Q8N9C0 903 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SH3RF3Q8TEJ3 882 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PPP1R13LQ8WUF5 828 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 AUTS2Q8WXX7 1259 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FAM111AQ96PZ2 611 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 C9orf16Q9BUW7 83 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SCAPERQ9BY12 1400 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLC26A1Q9H2B4 701 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ARMC7Q9H6L4 198 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KCNH7Q9NS40 1196 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SAR1BQ9Y6B6 198 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 A0A1W2PQ09 198 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 OR2AT4A6NND4 320 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 UGT1A9O60656 530 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SOAT2O75908 522 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NADKO95544 446 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GNA14O95837 355 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ASNSP08243 561 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 F8A1P23610 371 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ITGB8P26012 769 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CTHP32929 405 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 IL12RB1P42701 662 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms