RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PBX4Q9BYU1 374 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 MAGEH1Q9H213 219 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 ACSS3Q9H6R3 686 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 LRRC40Q9H9A6 602 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 EURLQ9NYK6 297 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 CFAP97Q9P2B7 532 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 MAD1L1Q9Y6D9 718 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 TCRBV9S1A1TA0A576 114 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 SDR42E2A6NKP2 422 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 GFRA2O00451 464 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 PRAMEF11O60813 436 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 CDH16O75309 829 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 SPAG6O75602 509 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 FGF19O95750 216 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 RHOP08100 348 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 RHOCP08134 193 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 PFKLP17858 780 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 HPDP32754 393 aaPredicted RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 RENBPP51606 427 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 ZNF177Q13360 481 aaPredicted RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 TEAD2Q15562 447 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 ZNF697Q5TEC3 545 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 MARC1Q5VT66 337 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 TTC39BQ5VTQ0 682 aaPredicted RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 UNC5AQ6ZN44 842 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 HTR3DQ70Z44 454 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 FAM217AQ8IXS0 508 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 TEX26Q8N6G2 289 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 TRIM56Q9BRZ2 755 aaKnown RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 SMG9Q9H0W8 520 aaKnown RBP17.18■□□□□ 0.34
CLN3-252ENST00000636907 NKX2-4Q9H2Z4 354 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 PDFQ9HBH1 243 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 NT5MQ9NPB1 228 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 CASS4Q9NQ75 786 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 LGALS13Q9UHV8 139 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 SH3BP1Q9Y3L3 701 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 HCFC2Q9Y5Z7 792 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 MYO7AQ13402 2215 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 DOCK6Q96HP0 2047 aa17.18■□□□□ 0.34
CLN3-252ENST00000636907 CHD5Q8TDI0 1954 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 TBL1XO60907 577 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 PIAS1O75925 651 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 MT-CYBP00156 380 aaPredicted RBP17.17■□□□□ 0.34
CLN3-252ENST00000636907 HOXD9P28356 352 aaPredicted RBP17.17■□□□□ 0.34
CLN3-252ENST00000636907 CRADDP78560 199 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 SLC5A9Q2M3M2 681 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 CXorf57Q6NSI4 855 aaKnown RBP17.17■□□□□ 0.34
CLN3-252ENST00000636907 KDM7AQ6ZMT4 941 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 LEKR1Q6ZMV7 388 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 TDRPQ86YL5 185 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 CYP4X1Q8N118 509 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 NSMCE1Q8WV22 266 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 ARNTL2Q8WYA1 636 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 APOL2Q9BQE5 337 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 STMN4Q9H169 189 aaPredicted RBP17.17■□□□□ 0.34
CLN3-252ENST00000636907 SYBUQ9NX95 663 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 TBK1Q9UHD2 729 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 TBC1D30Q9Y2I9 924 aa17.17■□□□□ 0.34
CLN3-252ENST00000636907 AAR2Q9Y312 384 aaKnown RBP17.17■□□□□ 0.34
CLN3-252ENST00000636907 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 ILVBLA1L0T0 632 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 LEFTY2O00292 366 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 PSMD3O43242 534 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 XYLBO75191 536 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ANXA9O76027 345 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 DDX6P26196 483 aaKnown RBP eCLIP17.16■□□□□ 0.34
CLN3-252ENST00000636907 ATP1A2P50993 1020 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 MAXP61244 160 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 NTHL1P78549 312 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 TNK2Q07912 1038 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 LBRQ14739 615 aaKnown RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 KLHL38Q2WGJ6 581 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 IL31Q6EBC2 164 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 SETD3Q86TU7 594 aaPredicted RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 BBS7Q8IWZ6 715 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 RIBC1Q8N443 379 aaPredicted RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 HJURPQ8NCD3 748 aaPredicted RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 MRRFQ96E11 262 aaKnown RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 STAMBPL1Q96FJ0 436 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 SLC25A51Q9H1U9 297 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ZDHHC7Q9NXF8 308 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ARHGAP26Q9UNA1 814 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ZNF510Q9Y2H8 683 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ATG2AQ2TAZ0 1938 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 GSTA2P09210 222 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ETFBP38117 255 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 GEMP55040 296 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 GEMIN4P57678 1058 aaKnown RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 PRSS36Q5K4E3 855 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 TMCO4Q5TGY1 634 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 EMC10Q5UCC4 262 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 NAPEPLDQ6IQ20 393 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 CASC4Q6P4E1 433 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 PRPF39Q86UA1 669 aaKnown RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 CMTM8Q8IZV2 173 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 PGBD5Q8N414 524 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 DNAAF3Q8N9W5 541 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 LEMD2Q8NC56 503 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 ZNF707Q96C28 371 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms